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Title: Pull requests · biopython/biopython · GitHub

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Description: Official git repository for Biopython (originally converted from CVS) - Pull requests · biopython/biopython

Open Graph Description: Official git repository for Biopython (originally converted from CVS) - Pull requests · biopython/biopython

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Add title parameter to Phylo.drawhttps://www.github.com/biopython/biopython/pull/5262
sahandtkod-bytehttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Asahandtkod-byte
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https://www.github.com/biopython/biopython/pull/5262
Bump actions/setup-python from 6 to 7https://www.github.com/biopython/biopython/pull/5261
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https://www.github.com/biopython/biopython/pull/5261
Fix obsolete move logic in PDBList.update_pdb for mmCIF/mmtf and assemblieshttps://www.github.com/biopython/biopython/pull/5256
SID-6921https://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3ASID-6921
7 https://www.github.com/biopython/biopython/pull/5256
https://www.github.com/biopython/biopython/pull/5256
Update KEGG APIhttps://www.github.com/biopython/biopython/pull/5255
synqahttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Asynqa
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7 https://www.github.com/biopython/biopython/pull/5255
https://www.github.com/biopython/biopython/pull/5255
Bump actions/cache from 5 to 6https://www.github.com/biopython/biopython/pull/5253
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https://www.github.com/biopython/biopython/pull/5253
Fix 5235 - Endian issue with binary CIF https://www.github.com/biopython/biopython/pull/5252
Will-Tylerhttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3AWill-Tyler
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https://www.github.com/biopython/biopython/pull/5252
Feat: Add optional title parameter to plotting functionhttps://www.github.com/biopython/biopython/pull/5251
dawnandrew100https://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Adawnandrew100
1 https://www.github.com/biopython/biopython/issues/5251/linked_closing_reference?reference_location=REPO_ISSUES_INDEX
7 https://www.github.com/biopython/biopython/pull/5251
https://www.github.com/biopython/biopython/pull/5251
Atom comparison of element, pqr_charge, and radius was brokenhttps://www.github.com/biopython/biopython/pull/5249
peterjchttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Apeterjc
1 https://www.github.com/biopython/biopython/pull/5249
https://www.github.com/biopython/biopython/pull/5249
Calculate TLEN when writing SAM alignmentshttps://www.github.com/biopython/biopython/pull/5244
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https://www.github.com/biopython/biopython/pull/5244
Bump actions/checkout from 6 to 7https://www.github.com/biopython/biopython/pull/5242
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https://www.github.com/biopython/biopython/pull/5242
First draft of no-AI policy.https://www.github.com/biopython/biopython/pull/5241
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https://www.github.com/biopython/biopython/pull/5241
Add docstrings to SequenceDataAbstractBaseClass magic methodshttps://www.github.com/biopython/biopython/pull/5240
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https://www.github.com/biopython/biopython/pull/5240
Add PDB and PAE downloads to Bio.PDB.alphafold_dbhttps://www.github.com/biopython/biopython/pull/5236
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Bump codecov/codecov-action from 6 to 7https://www.github.com/biopython/biopython/pull/5234
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https://www.github.com/biopython/biopython/pull/5234
Add pymysql driver support to BioSQLhttps://www.github.com/biopython/biopython/pull/5233
yiyabohttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Ayiyabo
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fix(PDB): extend obsolete file handling to mmCIF and XML formatshttps://www.github.com/biopython/biopython/pull/5231
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https://www.github.com/biopython/biopython/pull/5231
Feature/alphafold proteome bulk downloadhttps://www.github.com/biopython/biopython/pull/5221
gabuflehttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Agabufle
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https://www.github.com/biopython/biopython/pull/5221
Percent to f-strings using flynt v1.0.6https://www.github.com/biopython/biopython/pull/5219
peterjchttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Apeterjc
1 https://www.github.com/biopython/biopython/pull/5219
https://www.github.com/biopython/biopython/pull/5219
SeqUtils: Improve GC123 robustness and modernize SearchIO reprhttps://www.github.com/biopython/biopython/pull/5214
Amnotreallyfunnyhttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3AAmnotreallyfunny
1 https://www.github.com/biopython/biopython/pull/5214
https://www.github.com/biopython/biopython/pull/5214
Tests: add tests for six_frame_translations and nt_search in Bio.SeqUtilshttps://www.github.com/biopython/biopython/pull/5211
amitsjchttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Aamitsjc
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https://www.github.com/biopython/biopython/pull/5211
Add fasta-ncbi format for NCBI FASTA header dbxref parsinghttps://www.github.com/biopython/biopython/pull/5201
mmokrejshttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Ammokrejs
2 https://www.github.com/biopython/biopython/pull/5201
https://www.github.com/biopython/biopython/pull/5201
Add 18 pKa scales for isoelectric point calculationhttps://www.github.com/biopython/biopython/pull/5200
mmokrejshttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Ammokrejs
17 https://www.github.com/biopython/biopython/pull/5200
https://www.github.com/biopython/biopython/pull/5200
Draw trees in vertical, horizontal and circular orientationshttps://www.github.com/biopython/biopython/pull/5199
mmokrejshttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Ammokrejs
7 https://www.github.com/biopython/biopython/pull/5199
https://www.github.com/biopython/biopython/pull/5199
PERF: Optimise SequentialSeqFileRandomAccess index constructionhttps://www.github.com/biopython/biopython/pull/5198
mmokrejshttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Ammokrejs
1 https://www.github.com/biopython/biopython/issues/5198/linked_closing_reference?reference_location=REPO_ISSUES_INDEX
https://www.github.com/biopython/biopython/pull/5198
Support minimal MEME files without Background letter frequencies line.https://www.github.com/biopython/biopython/pull/5194
ghulshttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+author%3Aghuls
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https://www.github.com/biopython/biopython/pull/5194
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2https://www.github.com/biopython/biopython/pulls?page=2&q=is%3Apr+is%3Aopen
3https://www.github.com/biopython/biopython/pulls?page=3&q=is%3Apr+is%3Aopen
4https://www.github.com/biopython/biopython/pulls?page=4&q=is%3Apr+is%3Aopen
5https://www.github.com/biopython/biopython/pulls?page=5&q=is%3Apr+is%3Aopen
6https://www.github.com/biopython/biopython/pulls?page=6&q=is%3Apr+is%3Aopen
Nexthttps://www.github.com/biopython/biopython/pulls?page=2&q=is%3Apr+is%3Aopen
Nexthttps://www.github.com/biopython/biopython/pulls?page=2&q=is%3Apr+is%3Aopen
no:milestonehttps://www.github.com/biopython/biopython/issues?q=is%3Apr+is%3Aopen+no%3Amilestone
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