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Title: Ryan Wick’s bioinformatics blog | a blog for miscellaneous bioinformatics stuff

Open Graph Title: Ryan Wick’s bioinformatics blog

X Title: Ryan Wick’s bioinformatics blog

Description: a blog for miscellaneous bioinformatics stuff

Open Graph Description: a blog for miscellaneous bioinformatics stuff

Opengraph URL: https://rrwick.github.io/

Generator: Jekyll v3.10.0

direct link

Domain: rrwick.github.io

Hey, it has json ld scripts: 
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NoneIE=edge
authorRyan Wick
og:localeen_US
og:site_nameRyan Wick’s bioinformatics blog
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Links:

Ryan Wick's bioinformatics bloghttps://rrwick.github.io/
Abouthttps://rrwick.github.io/about/
Dorado v2.0.0 part 2: assembly polishing https://rrwick.github.io/2026/06/19/dorado-v2-polishing.html
Dorado v2.0.0: no more sup? https://rrwick.github.io/2026/06/11/dorado-v2.html
ONT read QC strategies for assembly https://rrwick.github.io/2026/02/05/read_qc_testing.html
P2 Solo announcement and the trade-offs of a more stable ONT https://rrwick.github.io/2026/01/21/p2_solo.html
Benchmark update: metaMDBG and Myloasm https://rrwick.github.io/2025/09/23/autocycler-benchmark-update.html
Cross-sample homopolymer polishing with Pypolca https://rrwick.github.io/2025/09/04/homopolymer-polishing.html
Dorado v1.0.0 and the v5.2.0 basecalling models https://rrwick.github.io/2025/05/27/dorado-v1.html
FASTQ assemblies with Dorado polish https://rrwick.github.io/2025/02/19/fastq-assemblies.html
Medaka vs Dorado polish https://rrwick.github.io/2025/02/07/dorado-polish.html
A first look at CycloneSEQ data https://rrwick.github.io/2024/12/17/cycloneseq.html
Medaka v2: progress and potential pitfalls https://rrwick.github.io/2024/10/17/medaka-v2.html
Spring OnION: a high-spec laptop for ONT sequencing https://rrwick.github.io/2024/08/16/springonion.html
HERRO read correction – part 2 https://rrwick.github.io/2024/07/31/herro_2.html
HERRO read correction – part 1 https://rrwick.github.io/2024/07/26/herro_1.html
Short-read depth recommendations for polishing https://rrwick.github.io/2024/06/11/short-read-depth.html
Duplex basecalling for whole-genome assembly https://rrwick.github.io/2024/05/08/duplex_assemblies.html
A tale of two misassemblies https://rrwick.github.io/2024/02/15/misassemblies.html
Yet another ONT accuracy test: Dorado v0.5.0 https://rrwick.github.io/2023/12/18/ont-only-accuracy-update.html
OnION: a high-spec desktop for ONT sequencing https://rrwick.github.io/2023/12/09/ont-desktop.html
ONT accuracy vs depth update https://rrwick.github.io/2023/11/06/accuracy-vs-depth-update.html
ONT-only accuracy: 5 kHz and Dorado https://rrwick.github.io/2023/10/24/ont-only-accuracy-update.html
Mojo: the future of bioinformatics tools? https://rrwick.github.io/2023/06/02/mojo-for-bioinformatics.html
Short-read polishing of short-read assemblies https://rrwick.github.io/2023/05/15/short-read-polishing-short-read-assemblies.html
ONT-only accuracy with R10.4.1 https://rrwick.github.io/2023/05/05/ont-only-accuracy-with-r10.4.1.html
Viewing tables on the command line https://rrwick.github.io/2023/04/19/viewing_tables_on_the_command_line.html
A perfect bacterial genome from PacBio HiFi reads https://rrwick.github.io/2023/03/07/pacbio-hifi.html
Dead-end count for QC of short-read assemblies https://rrwick.github.io/2023/02/21/dead-ends-for-assembly-qc.html
Oxford Nanopore accuracy vs depth https://rrwick.github.io/2021/08/10/accuracy-vs-depth.html
Choose-your-own-adventure guide to bacterial genome assembly https://rrwick.github.io/2020/10/30/guide-to-bacterial-genome-assembly.html
https://github.com/rrwick
https://twitter.com/rrwick
https://bsky.app/profile/rrwick.bsky.social
https://genomic.social/@rrwick
https://scholar.google.com.au/citations?user=Bwv5CQYAAAAJ
https://orcid.org/0000-0001-8349-0778
https://www.linkedin.com/in/rrwick

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