René's URL Explorer Experiment

Title: Data preparation APIs — vitessce documentation

Generator: Docutils 0.17.1: http://docutils.sourceforge.net/

Links:

vitessce	https://python-docs.vitessce.io/index.html
Getting Started	https://python-docs.vitessce.io/index.html
Widget examples	https://python-docs.vitessce.io/widget_examples.html
Data preparation examples	https://python-docs.vitessce.io/data_examples.html
View config API	https://python-docs.vitessce.io/api_config.html
Data preparation APIs	https://python-docs.vitessce.io/api_data.html
vitessce.wrappers	https://python-docs.vitessce.io/api_data.html#module-vitessce.wrappers
vitessce.export	https://python-docs.vitessce.io/api_data.html#module-vitessce.export
vitessce.data_utils	https://python-docs.vitessce.io/api_data.html#module-vitessce.data_utils.ome
Data location options	https://python-docs.vitessce.io/data_options.html
Widget plugins	https://python-docs.vitessce.io/widget_plugins.html
Screenshots	https://python-docs.vitessce.io/screenshots.html
vitessce	https://python-docs.vitessce.io/index.html
	https://python-docs.vitessce.io/index.html
Edit on GitHub	https://github.com/vitessce/vitessce-python/blob/main/docs/api_data.rst
	https://python-docs.vitessce.io/api_data.html#data-preparation-apis
	https://python-docs.vitessce.io/api_data.html#module-vitessce.wrappers
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L59-L290
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L279-L290
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.auto_view_config
VitessceConfig	https://python-docs.vitessce.io/api_config.html#vitessce.config.VitessceConfig
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L87-L98
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L122-L129
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.get_artifacts
dict	https://docs.python.org/3/library/stdtypes.html#dict
str	https://docs.python.org/3/library/stdtypes.html#str
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L159-L173
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.get_file_defs
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L227-L250
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.get_local_dir_route
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L175-L192
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.get_out_dir_route
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L100-L107
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.get_routes
list	https://docs.python.org/3/library/stdtypes.html#list
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L143-L157
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.get_stores
dict	https://docs.python.org/3/library/stdtypes.html#dict
str	https://docs.python.org/3/library/stdtypes.html#str
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L109-L120
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper.register_artifact
str	https://docs.python.org/3/library/stdtypes.html#str
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1195-L1402
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AnnDataWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
bool	https://docs.python.org/3/library/functions.html#bool
dict	https://docs.python.org/3/library/stdtypes.html#dict
None	https://docs.python.org/3/library/constants.html#None
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1387-L1402
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AnnDataWrapper.auto_view_config
VitessceConfig	https://python-docs.vitessce.io/api_config.html#vitessce.config.VitessceConfig
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1306-L1316
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AnnDataWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L737-L823
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.CsvWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
dict	https://docs.python.org/3/library/stdtypes.html#dict
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L770-L780
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.CsvWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L474-L598
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ImageOmeTiffWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates	http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates
dict	https://docs.python.org/3/library/stdtypes.html#dict
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L519-L529
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ImageOmeTiffWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L996-L1075
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ImageOmeZarrWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates	http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates
dict	https://docs.python.org/3/library/stdtypes.html#dict
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1035-L1045
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ImageOmeZarrWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L826-L912
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.JsonWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
dict	https://docs.python.org/3/library/stdtypes.html#dict
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L859-L869
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.JsonWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L293-L341
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.MultiImageWrapper
list	https://docs.python.org/3/library/stdtypes.html#list
OmeTiffWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.OmeTiffWrapper
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L307-L314
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.MultiImageWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1575-L1626
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.MultivecZarrWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1594-L1604
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.MultivecZarrWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L601-L734
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ObsSegmentationsOmeTiffWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates	http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates
bool	https://docs.python.org/3/library/functions.html#bool
dict	https://docs.python.org/3/library/stdtypes.html#dict
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L652-L662
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ObsSegmentationsOmeTiffWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1078-L1161
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ObsSegmentationsOmeZarrWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates	http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates
dict	https://docs.python.org/3/library/stdtypes.html#dict
bool	https://docs.python.org/3/library/functions.html#bool
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1118-L1128
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.ObsSegmentationsOmeZarrWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L344-L471
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.OmeTiffWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates	http://www.opengl-tutorial.org/beginners-tutorials/tutorial-3-matrices/#homogeneous-coordinates
bool	https://docs.python.org/3/library/functions.html#bool
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L376-L386
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.OmeTiffWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L915-L993
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.OmeZarrWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
AbstractWrapper	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.AbstractWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L944-L954
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.OmeZarrWrapper.convert_and_save
str	https://docs.python.org/3/library/stdtypes.html#str
int	https://docs.python.org/3/library/functions.html#int
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1408-L1572
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.SpatialDataWrapper
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
None	https://docs.python.org/3/library/constants.html#None
dict	https://docs.python.org/3/library/stdtypes.html#dict
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
None	https://docs.python.org/3/library/constants.html#None
str	https://docs.python.org/3/library/stdtypes.html#str
list	https://docs.python.org/3/library/stdtypes.html#list
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/wrappers.py#L1477-L1545
	https://python-docs.vitessce.io/api_data.html#vitessce.wrappers.SpatialDataWrapper.from_object
	https://python-docs.vitessce.io/api_data.html#module-vitessce.export
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/export.py#L62-L100
	https://python-docs.vitessce.io/api_data.html#vitessce.export.export_to_files
VitessceConfig	https://python-docs.vitessce.io/api_config.html#vitessce.config.VitessceConfig
str	https://docs.python.org/3/library/stdtypes.html#str
str	https://docs.python.org/3/library/stdtypes.html#str
dict	https://docs.python.org/3/library/stdtypes.html#dict
[source]	https://github.com/vitessce/vitessce-python/blob/main/vitessce/export.py#L12-L59
	https://python-docs.vitessce.io/api_data.html#vitessce.export.export_to_s3
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