René's URL Explorer Experiment


Title: GitHub - vmikk/NextITS: A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

Open Graph Title: GitHub - vmikk/NextITS: A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

X Title: GitHub - vmikk/NextITS: A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio

Description: A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio - vmikk/NextITS

Open Graph Description: A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio - vmikk/NextITS

X Description: A pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio - vmikk/NextITS

Opengraph URL: https://github.com/vmikk/NextITS

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:76feaa5c-0161-77ff-9cfa-d5f3d8d850f3
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idAEBE:2C701D:27E042:364FE7:698E0B08
html-safe-noncebfb2432234b76d972464c77092e6acfc8669a6f9cf06708c9b7cf5e8c5755b8e
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBRUJFOjJDNzAxRDoyN0UwNDI6MzY0RkU3OjY5OEUwQjA4IiwidmlzaXRvcl9pZCI6IjQzNTU1MTgzNzgwNzAxMTcxMjgiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmacd6393583dc0d3af93d0e8728ebb0899a113514fef691121b4d779dfffa209cff
hovercard-subject-tagrepository:511502173
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/vmikk/NextITS
twitter:imagehttps://opengraph.githubassets.com/10c78078b0b61250371a51bb8e47e98797269d8f33617c35576ccacf305599c6/vmikk/NextITS
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/10c78078b0b61250371a51bb8e47e98797269d8f33617c35576ccacf305599c6/vmikk/NextITS
og:image:altA pipeline for metabarcoding fungi and other eukaryotes with full-length ITS sequenced with PacBio - vmikk/NextITS
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonefdf74c91c9ac187cc5cd7b14d4af2d6ef3e18136d002f5d36253f8538e97ee4c
turbo-cache-controlno-preview
go-importgithub.com/vmikk/NextITS git https://github.com/vmikk/NextITS.git
octolytics-dimension-user_id7162120
octolytics-dimension-user_loginvmikk
octolytics-dimension-repository_id511502173
octolytics-dimension-repository_nwovmikk/NextITS
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id511502173
octolytics-dimension-repository_network_root_nwovmikk/NextITS
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release1a5a3e7bbfb3486980e340c242368684156fba87
ui-targetcanary-2
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/vmikk/NextITS#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fvmikk%2FNextITS
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fvmikk%2FNextITS
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=vmikk%2FNextITS
Reloadhttps://patch-diff.githubusercontent.com/vmikk/NextITS
Reloadhttps://patch-diff.githubusercontent.com/vmikk/NextITS
Reloadhttps://patch-diff.githubusercontent.com/vmikk/NextITS
vmikk https://patch-diff.githubusercontent.com/vmikk
NextITShttps://patch-diff.githubusercontent.com/vmikk/NextITS
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fvmikk%2FNextITS
Fork 1 https://patch-diff.githubusercontent.com/login?return_to=%2Fvmikk%2FNextITS
Star 8 https://patch-diff.githubusercontent.com/login?return_to=%2Fvmikk%2FNextITS
next-its.github.iohttps://next-its.github.io
Apache-2.0 license https://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/LICENSE
8 stars https://patch-diff.githubusercontent.com/vmikk/NextITS/stargazers
1 fork https://patch-diff.githubusercontent.com/vmikk/NextITS/forks
Branches https://patch-diff.githubusercontent.com/vmikk/NextITS/branches
Tags https://patch-diff.githubusercontent.com/vmikk/NextITS/tags
Activity https://patch-diff.githubusercontent.com/vmikk/NextITS/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fvmikk%2FNextITS
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fvmikk%2FNextITS
Code https://patch-diff.githubusercontent.com/vmikk/NextITS
Issues 2 https://patch-diff.githubusercontent.com/vmikk/NextITS/issues
Pull requests 0 https://patch-diff.githubusercontent.com/vmikk/NextITS/pulls
Actions https://patch-diff.githubusercontent.com/vmikk/NextITS/actions
Projects 0 https://patch-diff.githubusercontent.com/vmikk/NextITS/projects
Security 0 https://patch-diff.githubusercontent.com/vmikk/NextITS/security
Insights https://patch-diff.githubusercontent.com/vmikk/NextITS/pulse
Code https://patch-diff.githubusercontent.com/vmikk/NextITS
Issues https://patch-diff.githubusercontent.com/vmikk/NextITS/issues
Pull requests https://patch-diff.githubusercontent.com/vmikk/NextITS/pulls
Actions https://patch-diff.githubusercontent.com/vmikk/NextITS/actions
Projects https://patch-diff.githubusercontent.com/vmikk/NextITS/projects
Security https://patch-diff.githubusercontent.com/vmikk/NextITS/security
Insights https://patch-diff.githubusercontent.com/vmikk/NextITS/pulse
Brancheshttps://patch-diff.githubusercontent.com/vmikk/NextITS/branches
Tagshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tags
https://patch-diff.githubusercontent.com/vmikk/NextITS/branches
https://patch-diff.githubusercontent.com/vmikk/NextITS/tags
923 Commitshttps://patch-diff.githubusercontent.com/vmikk/NextITS/commits/main/
https://patch-diff.githubusercontent.com/vmikk/NextITS/commits/main/
binhttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/bin
binhttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/bin
confhttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/conf
confhttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/conf
containerfileshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/containerfiles
containerfileshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/containerfiles
imageshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/images
imageshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/images
moduleshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/modules
moduleshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/modules
subworkflowshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/subworkflows
subworkflowshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/subworkflows
test_datahttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/test_data
test_datahttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/test_data
testshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/tests
testshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/tests
workflowshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/workflows
workflowshttps://patch-diff.githubusercontent.com/vmikk/NextITS/tree/main/workflows
.gitattributeshttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/.gitattributes
.gitattributeshttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/.gitattributes
.gitignorehttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/.gitignore
CHANGELOG.mdhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/CHANGELOG.md
CHANGELOG.mdhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/CHANGELOG.md
CITATION.cffhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/CITATION.cff
CITATION.cffhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/CITATION.cff
CITATIONS.mdhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/CITATIONS.md
CITATIONS.mdhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/CITATIONS.md
LICENSEhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/README.md
main.nfhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/main.nf
main.nfhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/main.nf
nextflow.confighttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/nextflow.config
nextflow.confighttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/nextflow.config
nextflow_schema.jsonhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/nextflow_schema.json
nextflow_schema.jsonhttps://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/nextflow_schema.json
READMEhttps://patch-diff.githubusercontent.com/vmikk/NextITS
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/vmikk/NextITS
https://patch-diff.githubusercontent.com/vmikk/NextITS/blob/main/images/NextITS_logo.svg
https://patch-diff.githubusercontent.com/vmikk/NextITS#nextits-
https://camo.githubusercontent.com/790511aedd70940b2fbde144bb43508787264bda1629efdb650db30436fb4764/68747470733a2f2f696d672e736869656c64732e696f2f6769746875622f762f72656c656173652f766d696b6b2f4e6578744954533f6c6162656c3d47697448756225323072656c6561736526636f6c6f723d323361613632
https://www.nextflow.io/
https://github.com/vmikk/NextITS/blob/main/LICENSE
https://cloud.sylabs.io/library/vmiks/nextits/nextits
https://hub.docker.com/r/vmikk/nextits/tags
https://podman.io/
https://doi.org/10.5281/zenodo.15074881
https://patch-diff.githubusercontent.com/vmikk/NextITS#introduction
https://patch-diff.githubusercontent.com/vmikk/NextITS#user-documentation
https://Next-ITS.github.io/https://Next-ITS.github.io/
https://patch-diff.githubusercontent.com/vmikk/NextITS#quick-start
https://patch-diff.githubusercontent.com/vmikk/NextITS#citation
https://github.com/vmikk/NextITShttps://github.com/vmikk/NextITS
next-its.github.iohttps://next-its.github.io
pipeline https://patch-diff.githubusercontent.com/topics/pipeline
nextflow https://patch-diff.githubusercontent.com/topics/nextflow
pacbio https://patch-diff.githubusercontent.com/topics/pacbio
fungi https://patch-diff.githubusercontent.com/topics/fungi
metabarcoding https://patch-diff.githubusercontent.com/topics/metabarcoding
its https://patch-diff.githubusercontent.com/topics/its
eukaryotes https://patch-diff.githubusercontent.com/topics/eukaryotes
internal-transcribed-spacer https://patch-diff.githubusercontent.com/topics/internal-transcribed-spacer
Readme https://patch-diff.githubusercontent.com/vmikk/NextITS#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/vmikk/NextITS#Apache-2.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/vmikk/NextITS
Activityhttps://patch-diff.githubusercontent.com/vmikk/NextITS/activity
8 starshttps://patch-diff.githubusercontent.com/vmikk/NextITS/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/vmikk/NextITS/watchers
1 forkhttps://patch-diff.githubusercontent.com/vmikk/NextITS/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fvmikk%2FNextITS&report=vmikk+%28user%29
Releases 6https://patch-diff.githubusercontent.com/vmikk/NextITS/releases
1.1.0 Latest Jan 22, 2026 https://patch-diff.githubusercontent.com/vmikk/NextITS/releases/tag/1.1.0
+ 5 releaseshttps://patch-diff.githubusercontent.com/vmikk/NextITS/releases
Packages 0https://patch-diff.githubusercontent.com/users/vmikk/packages?repo_name=NextITS
Nextflow 48.8% https://patch-diff.githubusercontent.com/vmikk/NextITS/search?l=nextflow
R 44.4% https://patch-diff.githubusercontent.com/vmikk/NextITS/search?l=r
Shell 3.8% https://patch-diff.githubusercontent.com/vmikk/NextITS/search?l=shell
Dockerfile 3.0% https://patch-diff.githubusercontent.com/vmikk/NextITS/search?l=dockerfile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.