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Title: GitHub - varda/varda2_preprocessing: Extract coverage information from gVCF and variants from VCF files and output in tabular format.

Open Graph Title: GitHub - varda/varda2_preprocessing: Extract coverage information from gVCF and variants from VCF files and output in tabular format.

X Title: GitHub - varda/varda2_preprocessing: Extract coverage information from gVCF and variants from VCF files and output in tabular format.

Description: Extract coverage information from gVCF and variants from VCF files and output in tabular format. - varda/varda2_preprocessing

Open Graph Description: Extract coverage information from gVCF and variants from VCF files and output in tabular format. - varda/varda2_preprocessing

X Description: Extract coverage information from gVCF and variants from VCF files and output in tabular format. - varda/varda2_preprocessing

Opengraph URL: https://github.com/varda/varda2_preprocessing

X: @github

direct link

Domain: patch-diff.githubusercontent.com

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og:image:altExtract coverage information from gVCF and variants from VCF files and output in tabular format. - varda/varda2_preprocessing
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