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Title: Optimize the Nuc enum with bitwise operations and remove the lookup in trinucleotide by bmesuere · Pull Request #18 · unipept/FragGeneScanRs · GitHub

Open Graph Title: Optimize the Nuc enum with bitwise operations and remove the lookup in trinucleotide by bmesuere · Pull Request #18 · unipept/FragGeneScanRs

X Title: Optimize the Nuc enum with bitwise operations and remove the lookup in trinucleotide by bmesuere · Pull Request #18 · unipept/FragGeneScanRs

Description: Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads. - Optimize the Nuc enum with bitwise operations and remove the lookup in trinucleotide by bmesuere · Pull Request #18 · unipept/FragGeneScanRs

Open Graph Description: This PR optimizes the Nuc enum to use bitwise operations and replaces the trinucleotide function by direct calculation. Benchmark on my laptop: Benchmark: Short reads (NC_000913-454.fna) Benchmark ...

X Description: This PR optimizes the Nuc enum to use bitwise operations and replaces the trinucleotide function by direct calculation. Benchmark on my laptop: Benchmark: Short reads (NC_000913-454.fna) Benchmark ...

Opengraph URL: https://github.com/unipept/FragGeneScanRs/pull/18

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