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{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"Cannot import segmentify (or run example script) if installed from PyPI","articleBody":"Cannot import segmentify after installation [from PyPI](https://pypi.org/project/segmentify/#history) following the instructions in the README, but works fine from local installation. Is it just me that has this issue, or does the PyPI release need updating?\r\n\r\nMy first thought was that the release on PyPI was just an empty placeholder, but this PR suggests that it should be functional (https://github.com/transformify-plugins/segmentify/pull/22). I have a conda environment with all the correct dependencies already installed. When I install segmentify from PyPI, I can't import segmentify (which means the example script doesn't run). When I uninstall the PyPI version and install segmentify locally from the master branch, the example script launches fine.\r\n\r\nDetails:\r\n```\r\n(segmentify) genevieve@MU00060583:~/Documents$ pip install segmentify\r\nWARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.\r\nPlease see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.\r\nTo avoid this problem you can invoke Python with '-m pip' instead of running pip directly.\r\nProcessing /home/genevieve/.cache/pip/wheels/d8/a2/f4/ae0b5c77b1fe14e6a20b882550eed4d503182b5ac17e474df9/segmentify-0.0.1-py3-none-any.whl\r\nInstalling collected packages: segmentify\r\nSuccessfully installed segmentify-0.0.1\r\n(segmentify) genevieve@MU00060583:~/Documents$ conda list\r\n# packages in environment at /home/genevieve/anaconda3/envs/segmentify:\r\n#\r\n# Name                    Version                   Build  Channel\r\n_libgcc_mutex             0.1                        main  \r\nalabaster                 0.7.12                   pypi_0    pypi\r\nbabel                     2.8.0                    pypi_0    pypi\r\nbackcall                  0.1.0                    pypi_0    pypi\r\nca-certificates           2019.11.27                    0  \r\ncertifi                   2019.11.28               py37_0  \r\nchardet                   3.0.4                    pypi_0    pypi\r\ncycler                    0.10.0                   pypi_0    pypi\r\ndask                      2.9.2                    pypi_0    pypi\r\ndecorator                 4.4.1                    pypi_0    pypi\r\ndocutils                  0.16                     pypi_0    pypi\r\nfreetype-py               2.1.0.post1              pypi_0    pypi\r\nfsspec                    0.6.2                    pypi_0    pypi\r\nidna                      2.8                      pypi_0    pypi\r\nimageio                   2.6.1                    pypi_0    pypi\r\nimagesize                 1.2.0                    pypi_0    pypi\r\nipykernel                 5.1.4                    pypi_0    pypi\r\nipython                   7.11.1                   pypi_0    pypi\r\nipython-genutils          0.2.0                    pypi_0    pypi\r\njedi                      0.16.0                   pypi_0    pypi\r\njinja2                    2.11.0                   pypi_0    pypi\r\njoblib                    0.14.1                   pypi_0    pypi\r\njupyter-client            5.3.4                    pypi_0    pypi\r\njupyter-core              4.6.1                    pypi_0    pypi\r\nkiwisolver                1.1.0                    pypi_0    pypi\r\nld_impl_linux-64          2.33.1               h53a641e_7  \r\nlibedit                   3.1.20181209         hc058e9b_0  \r\nlibffi                    3.2.1                hd88cf55_4  \r\nlibgcc-ng                 9.1.0                hdf63c60_0  \r\nlibstdcxx-ng              9.1.0                hdf63c60_0  \r\nllvmlite                  0.31.0                   pypi_0    pypi\r\nmarkupsafe                1.1.1                    pypi_0    pypi\r\nmatplotlib                3.1.2                    pypi_0    pypi\r\nnapari                    0.2.10                   pypi_0    pypi\r\nncurses                   6.1                  he6710b0_1  \r\nnetworkx                  2.4                      pypi_0    pypi\r\nnumba                     0.47.0                   pypi_0    pypi\r\nnumpy                     1.18.1                   pypi_0    pypi\r\nnumpydoc                  0.9.2                    pypi_0    pypi\r\nopenssl                   1.1.1d               h7b6447c_3  \r\npackaging                 20.1                     pypi_0    pypi\r\nparso                     0.6.0                    pypi_0    pypi\r\npexpect                   4.8.0                    pypi_0    pypi\r\npickleshare               0.7.5                    pypi_0    pypi\r\npillow                    7.0.0                    pypi_0    pypi\r\npip                       20.0.2                   py37_0  \r\nprompt-toolkit            3.0.3                    pypi_0    pypi\r\nptyprocess                0.6.0                    pypi_0    pypi\r\npygments                  2.5.2                    pypi_0    pypi\r\npyopengl                  3.1.5                    pypi_0    pypi\r\npyparsing                 2.4.6                    pypi_0    pypi\r\npyside2                   5.14.0                   pypi_0    pypi\r\npython                    3.7.6                h0371630_2  \r\npython-dateutil           2.8.1                    pypi_0    pypi\r\npytz                      2019.3                   pypi_0    pypi\r\npywavelets                1.1.1                    pypi_0    pypi\r\npyzmq                     18.1.1                   pypi_0    pypi\r\nqtconsole                 4.6.0                    pypi_0    pypi\r\nqtpy                      1.9.0                    pypi_0    pypi\r\nreadline                  7.0                  h7b6447c_5  \r\nrequests                  2.22.0                   pypi_0    pypi\r\nscikit-image              0.16.2                   pypi_0    pypi\r\nscikit-learn              0.22.1                   pypi_0    pypi\r\nsegmentify                0.0.1                    pypi_0    pypi\r\nsetuptools                45.1.0                   py37_0  \r\nshiboken2                 5.14.0                   pypi_0    pypi\r\nsix                       1.14.0                   pypi_0    pypi\r\nsnowballstemmer           2.0.0                    pypi_0    pypi\r\nsphinx                    2.3.1                    pypi_0    pypi\r\nsphinxcontrib-applehelp   1.0.1                    pypi_0    pypi\r\nsphinxcontrib-devhelp     1.0.1                    pypi_0    pypi\r\nsphinxcontrib-htmlhelp    1.0.2                    pypi_0    pypi\r\nsphinxcontrib-jsmath      1.0.1                    pypi_0    pypi\r\nsphinxcontrib-qthelp      1.0.2                    pypi_0    pypi\r\nsphinxcontrib-serializinghtml 1.1.3                    pypi_0    pypi\r\nsqlite                    3.30.1               h7b6447c_0  \r\ntk                        8.6.8                hbc83047_0  \r\ntoolz                     0.10.0                   pypi_0    pypi\r\ntorch                     1.4.0                    pypi_0    pypi\r\ntorchvision               0.5.0                    pypi_0    pypi\r\ntornado                   6.0.3                    pypi_0    pypi\r\ntraitlets                 4.3.3                    pypi_0    pypi\r\nurllib3                   1.25.8                   pypi_0    pypi\r\nvispy                     0.6.4                    pypi_0    pypi\r\nwcwidth                   0.1.8                    pypi_0    pypi\r\nwheel                     0.33.6                   py37_0  \r\nwrapt                     1.11.2                   pypi_0    pypi\r\nxz                        5.2.4                h14c3975_4  \r\nzlib                      1.2.11               h7b6447c_3  \r\n(segmentify) genevieve@MU00060583:~/Documents$ python\r\nPython 3.7.6 (default, Jan  8 2020, 19:59:22) \r\n[GCC 7.3.0] :: Anaconda, Inc. on linux\r\nType \"help\", \"copyright\", \"credits\" or \"license\" for more information.\r\n\u003e\u003e\u003e import segmentify\r\nTraceback (most recent call last):\r\n  File \"\u003cstdin\u003e\", line 1, in \u003cmodule\u003e\r\nModuleNotFoundError: No module named 'segmentify'\r\n\u003e\u003e\u003e \r\n\r\n```\r\n\r\nTthen if I uninstall the PyPI version of segmentify and install it locally from the master branch:\r\n```\r\npip uninstall segmentify\r\ngit clone git@github.com:transformify-plugins/segmentify.git\r\ncd segmentify\r\npip install .\r\n```\r\n...things work fine.","author":{"url":"https://github.com/GenevieveBuckley","@type":"Person","name":"GenevieveBuckley"},"datePublished":"2020-01-28T07:36:55.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":1},"url":"https://github.com/28/segmentify/issues/28"}