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Title: tidyomics · GitHub

Open Graph Title: tidyomics

X Title: tidyomics

Description: Open project to create tidy analysis packages for omics data - tidyomics

Open Graph Description: Open project to create tidy analysis packages for omics data - tidyomics

X Description: Open project to create tidy analysis packages for omics data - tidyomics

Opengraph URL: https://github.com/tidyomics

X: @github

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tidy data	https://vita.had.co.nz/papers/tidy-data.pdf
tidyomics open challenges	https://github.com/orgs/tidyomics/projects/1
below	https://patch-diff.githubusercontent.com/tidyomics#get-involved
tidyverse	https://dplyr.tidyverse.org/
Bioconductor	https://bioconductor.org
	https://patch-diff.githubusercontent.com/tidyomics#installer
https://github.com/tidyomics/tidyomics	https://github.com/tidyomics/tidyomics
Key Tidyomics Packages	https://patch-diff.githubusercontent.com/tidyomics#key-tidyomics-packages
Comparison to base R	https://patch-diff.githubusercontent.com/tidyomics#comparison-to-base-r
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Get Involved	https://patch-diff.githubusercontent.com/tidyomics#get-involved
	https://patch-diff.githubusercontent.com/tidyomics#key-tidyomics-packages
tidySummarizedExperiment	https://stemangiola.github.io/tidySummarizedExperiment/
Vignette	https://stemangiola.github.io/tidySummarizedExperiment/articles/introduction.html
GitHub	https://github.com/stemangiola/tidySummarizedExperiment
tidySingleCellExperiment	https://stemangiola.github.io/tidySingleCellExperiment
Vignette	https://stemangiola.github.io/tidySingleCellExperiment/articles/introduction.html
GitHub	https://github.com/stemangiola/tidySingleCellExperiment
tidySeurat	https://stemangiola.github.io/tidyseurat/
Vignette	https://stemangiola.github.io/tidyseurat/articles/introduction.html
GitHub	https://github.com/stemangiola/tidyseurat
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plyinteractions	https://tidyomics.github.io/plyinteractions/
Vignette	https://tidyomics.github.io/plyinteractions/articles/plyinteractions.html
GitHub	https://github.com/tidyomics/plyinteractions
plyxp	https://jtlandis.github.io/plyxp/
Vignette	https://jtlandis.github.io/plyxp/articles/plyxp.html
GitHub	https://github.com/jtlandis/plyxp
DFplyr	https://bioconductor.org/packages/DFplyr/
Vignette	https://www.bioconductor.org/packages//release/bioc/vignettes/DFplyr/inst/doc/example_usage.html
GitHub	https://github.com/jonocarroll/DFplyr
tidybulk	https://stemangiola.github.io/tidybulk/
Vignette	https://stemangiola.github.io/tidybulk/articles/introduction.html
GitHub	https://github.com/stemangiola/tidybulk/
nullranges	https://nullranges.github.io/nullranges/
Vignette	https://nullranges.github.io/nullranges/articles/nullranges.html
GitHub	https://github.com/nullranges/nullranges/
easylift	https://nahid18.github.io/easylift/
Vignette	https://nahid18.github.io/easylift/articles/easylift.html
GitHub	https://github.com/nahid18/easylift/
	https://patch-diff.githubusercontent.com/tidyomics#comparison-to-base-r
	https://patch-diff.githubusercontent.com/tidyomics#comparison-to-bioconductor
Gentleman et al 2004	https://doi.org/10.1186/gb-2004-5-10-r80
	https://patch-diff.githubusercontent.com/tidyomics#tutorials
Tidy single-cell analyses	https://tidyomics.github.io/tidyomicsWorkshopBioc2023/articles/tidyGenomicsTranscriptomics.html
Investigating chromatin composition and architecture	https://jserizay.com/Bioc2024tidyworkshop/
Tidy ranges tutorial	https://tidyomics.github.io/tidy-ranges-tutorial/
T1D GWAS SNPs and CD4+ peaks	https://htmlpreview.github.io/?https://github.com/mikelove/cd4-overlaps/blob/main/CATlas/analysis.html
Fluent genomics workflow	https://sa-lee.github.io/fluentGenomics/articles/fluentGenomics.html
Tidy spatial analyses	https://github.com/tidyomics/tidySpatialWorkshop
RNAseq-R-tidyverse 2022	https://mblue9.github.io/RNAseq-R-tidyverse/articles/tidytranscriptomics.html
	https://patch-diff.githubusercontent.com/tidyomics#news
Tidyomics blog	https://tidyomics.github.io/tidyomicsBlog/
	https://patch-diff.githubusercontent.com/tidyomics#talks
Tidy intro talk: the concepts of tidyomics for expression and ranges	https://tidyomics.github.io/tidy-intro-talk
Tidy analysis of genomic data	https://github.com/tidyomics/tidy-genomics-talk/blob/main/tidy-genomics-talk.pdf
Tidy enrichment analysis with plyranges and nullranges	https://github.com/tidyomics/tidy-genomics-talk/blob/main/tidy-enrichment.pdf
	https://patch-diff.githubusercontent.com/tidyomics#tidyomics-paper
The tidyomics ecosystem: Enhancing omic data analyses	https://www.biorxiv.org/content/10.1101/2023.09.10.557072v2
	https://patch-diff.githubusercontent.com/tidyomics#getting-help
#tidiness_in_bioc	https://community-bioc.zulipchat.com/
Bioconductor support site	https://support.bioconductor.org
	https://patch-diff.githubusercontent.com/tidyomics#get-involved
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many developers	https://github.com/orgs/tidyomics/people
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tidybulk	https://patch-diff.githubusercontent.com/tidyomics/tidybulk
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tidydeseq2	https://patch-diff.githubusercontent.com/tidyomics/tidydeseq2
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