René's URL Explorer Experiment


Title: GitHub - sxfss/gatk4-data-processing: Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Open Graph Title: GitHub - sxfss/gatk4-data-processing: Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

X Title: GitHub - sxfss/gatk4-data-processing: Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Description: Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools - sxfss/gatk4-data-processing

Open Graph Description: Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools - sxfss/gatk4-data-processing

X Description: Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools - sxfss/gatk4-data-processing

Opengraph URL: https://github.com/sxfss/gatk4-data-processing

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:efb7b288-d973-e20e-0efa-a9cf617cd9c8
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8270:99A39:3FABAE9:5399720:6992D086
html-safe-nonce091581ffec7d3b588705b92dc27700cad46167d38766c5874fcac86ddc90c9c2
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4MjcwOjk5QTM5OjNGQUJBRTk6NTM5OTcyMDo2OTkyRDA4NiIsInZpc2l0b3JfaWQiOiIzMDIyOTg3ODk1MjY0OTU2NTUwIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmaca73b3ad96cf0aa22a22e621bc28651e4f9820803ba885b976976383e04382212
hovercard-subject-tagrepository:497566270
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/sxfss/gatk4-data-processing
twitter:imagehttps://opengraph.githubassets.com/96afe89882f431a9644119f2a9c6f367c4bba2128882a29057080c3fa2f36b61/sxfss/gatk4-data-processing
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/96afe89882f431a9644119f2a9c6f367c4bba2128882a29057080c3fa2f36b61/sxfss/gatk4-data-processing
og:image:altWorkflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools - sxfss/gatk4-data-processing
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/sxfss/gatk4-data-processing git https://github.com/sxfss/gatk4-data-processing.git
octolytics-dimension-user_id87353719
octolytics-dimension-user_loginsxfss
octolytics-dimension-repository_id497566270
octolytics-dimension-repository_nwosxfss/gatk4-data-processing
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id105422180
octolytics-dimension-repository_parent_nwogatk-workflows/gatk4-data-processing
octolytics-dimension-repository_network_root_id105422180
octolytics-dimension-repository_network_root_nwogatk-workflows/gatk4-data-processing
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release84dcb133269e3cfe6e0296cc85fbacb92cae92bb
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fsxfss%2Fgatk4-data-processing
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fsxfss%2Fgatk4-data-processing
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=sxfss%2Fgatk4-data-processing
Reloadhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
Reloadhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
Reloadhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
sxfss https://patch-diff.githubusercontent.com/sxfss
gatk4-data-processinghttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
gatk-workflows/gatk4-data-processinghttps://patch-diff.githubusercontent.com/gatk-workflows/gatk4-data-processing
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fsxfss%2Fgatk4-data-processing
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fsxfss%2Fgatk4-data-processing
Star 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fsxfss%2Fgatk4-data-processing
BSD-3-Clause license https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/LICENSE
0 stars https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/stargazers
79 forks https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/forks
Branches https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/branches
Tags https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/tags
Activity https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fsxfss%2Fgatk4-data-processing
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fsxfss%2Fgatk4-data-processing
Code https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
Pull requests 0 https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/pulls
Actions https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/actions
Projects 0 https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/projects
Security 0 https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/security
Insights https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/pulse
Code https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
Pull requests https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/pulls
Actions https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/actions
Projects https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/projects
Security https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/security
Insights https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/pulse
Brancheshttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/branches
Tagshttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/tags
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/branches
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/tags
27 Commitshttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/commits/master/
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/commits/master/
.dockstore.ymlhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/.dockstore.yml
.dockstore.ymlhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/.dockstore.yml
LICENSEhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/README.md
generic.google-papi.options.jsonhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/generic.google-papi.options.json
generic.google-papi.options.jsonhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/generic.google-papi.options.json
processing-for-variant-discovery-gatk4.b37.wgs.inputs.jsonhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.b37.wgs.inputs.json
processing-for-variant-discovery-gatk4.b37.wgs.inputs.jsonhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.b37.wgs.inputs.json
processing-for-variant-discovery-gatk4.hg38.wgs.inputs.jsonhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
processing-for-variant-discovery-gatk4.hg38.wgs.inputs.jsonhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.hg38.wgs.inputs.json
processing-for-variant-discovery-gatk4.wdlhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.wdl
processing-for-variant-discovery-gatk4.wdlhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.wdl
READMEhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
BSD-3-Clause licensehttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#gatk4-data-processing
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#purpose-
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#processing-for-variant-discovery-gatk4-
GATK Best Practiceshttps://gatk.broadinstitute.org/hc/en-us/articles/360035535912
variant discovery analysishttps://gatk.broadinstitute.org/hc/en-us/articles/360035535932-Germline-short-variant-discovery-SNPs-Indels-
seq-format-conversionhttps://github.com/gatk-workflows/seq-format-conversion
gatk4-genome-processing-pipelinehttps://github.com/gatk-workflows/gatk4-genome-processing-pipeline
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#requirementsexpectations
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#outputs
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#software-version-requirements-
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#important-notes-
(How to) Execute Workflows from the gatk-workflows Git Organizationhttps://gatk.broadinstitute.org/hc/en-us/articles/360035530952
User Guidehttps://gatk.broadinstitute.org/hc/en-us/categories/360002310591
Resource Bundlehttps://gatk.broadinstitute.org/hc/en-us/articles/360035890811
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#contact-us-
GATKhttps://gatk.broadinstitute.org/hc/en-us/community/topics
Terrahttps://support.terra.bio/hc/en-us/community/topics/360000500432
https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#licensing-
https://github.com/openwdl/wdl/blob/master/LICENSEhttps://github.com/openwdl/wdl/blob/master/LICENSE
GATKhttps://software.broadinstitute.org/gatk/download/licensing.php
BWAhttp://bio-bwa.sourceforge.net/bwa.shtml#13
Picardhttps://broadinstitute.github.io/picard/
Samtoolshttp://www.htslib.org/terms/
Readme https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#readme-ov-file
BSD-3-Clause license https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing#BSD-3-Clause-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing
Activityhttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/activity
0 starshttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/watchers
0 forkshttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fsxfss%2Fgatk4-data-processing&report=sxfss+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/releases
9 tags https://patch-diff.githubusercontent.com/sxfss/gatk4-data-processing/tags
Packages 0https://patch-diff.githubusercontent.com/users/sxfss/packages?repo_name=gatk4-data-processing
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.