René's URL Explorer Experiment


Title: GitHub - sofroniewn/rosa: Modeling cell type specific gene expression from the genome

Open Graph Title: GitHub - sofroniewn/rosa: Modeling cell type specific gene expression from the genome

X Title: GitHub - sofroniewn/rosa: Modeling cell type specific gene expression from the genome

Description: Modeling cell type specific gene expression from the genome - sofroniewn/rosa

Open Graph Description: Modeling cell type specific gene expression from the genome - sofroniewn/rosa

X Description: Modeling cell type specific gene expression from the genome - sofroniewn/rosa

Opengraph URL: https://github.com/sofroniewn/rosa

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:06c1ef55-f5f8-cd19-6990-053acc759a17
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC11E:BD512:CD53D4:118923C:698F34AD
html-safe-noncebc1819d791375c23fa679c28a30978e3a03489a647dda312d76798a4ffac4a24
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDMTFFOkJENTEyOkNENTNENDoxMTg5MjNDOjY5OEYzNEFEIiwidmlzaXRvcl9pZCI6IjcxMDc4Mjk2Mjg2MTQ0MjM3MjUiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac1ce10899caf018df01ce35dbe119dc550aa6440494de2ef8545a9c327de77176
hovercard-subject-tagrepository:587611359
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/sofroniewn/rosa
twitter:imagehttps://opengraph.githubassets.com/c88502eeca148f6ab92197e912a927d790ded76786b4ab1e1ce70e2947c3640f/sofroniewn/rosa
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/c88502eeca148f6ab92197e912a927d790ded76786b4ab1e1ce70e2947c3640f/sofroniewn/rosa
og:image:altModeling cell type specific gene expression from the genome - sofroniewn/rosa
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None6102991c714c1a6a27d05fb4f96ea6ca87a6750b4f093b95cc57ed1b84b145a1
turbo-cache-controlno-preview
go-importgithub.com/sofroniewn/rosa git https://github.com/sofroniewn/rosa.git
octolytics-dimension-user_id6531703
octolytics-dimension-user_loginsofroniewn
octolytics-dimension-repository_id587611359
octolytics-dimension-repository_nwosofroniewn/rosa
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id587611359
octolytics-dimension-repository_network_root_nwosofroniewn/rosa
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasee2fe82f90e107669021e243add8f74ea2a9be1b3
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/sofroniewn/rosa#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fsofroniewn%2Frosa
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fsofroniewn%2Frosa
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=sofroniewn%2Frosa
Reloadhttps://patch-diff.githubusercontent.com/sofroniewn/rosa
Reloadhttps://patch-diff.githubusercontent.com/sofroniewn/rosa
Reloadhttps://patch-diff.githubusercontent.com/sofroniewn/rosa
sofroniewn https://patch-diff.githubusercontent.com/sofroniewn
rosahttps://patch-diff.githubusercontent.com/sofroniewn/rosa
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fsofroniewn%2Frosa
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fsofroniewn%2Frosa
Star 1 https://patch-diff.githubusercontent.com/login?return_to=%2Fsofroniewn%2Frosa
View license https://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/LICENSE
1 star https://patch-diff.githubusercontent.com/sofroniewn/rosa/stargazers
0 forks https://patch-diff.githubusercontent.com/sofroniewn/rosa/forks
Branches https://patch-diff.githubusercontent.com/sofroniewn/rosa/branches
Tags https://patch-diff.githubusercontent.com/sofroniewn/rosa/tags
Activity https://patch-diff.githubusercontent.com/sofroniewn/rosa/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fsofroniewn%2Frosa
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fsofroniewn%2Frosa
Code https://patch-diff.githubusercontent.com/sofroniewn/rosa
Issues 0 https://patch-diff.githubusercontent.com/sofroniewn/rosa/issues
Pull requests 0 https://patch-diff.githubusercontent.com/sofroniewn/rosa/pulls
Actions https://patch-diff.githubusercontent.com/sofroniewn/rosa/actions
Projects 0 https://patch-diff.githubusercontent.com/sofroniewn/rosa/projects
Security 0 https://patch-diff.githubusercontent.com/sofroniewn/rosa/security
Insights https://patch-diff.githubusercontent.com/sofroniewn/rosa/pulse
Code https://patch-diff.githubusercontent.com/sofroniewn/rosa
Issues https://patch-diff.githubusercontent.com/sofroniewn/rosa/issues
Pull requests https://patch-diff.githubusercontent.com/sofroniewn/rosa/pulls
Actions https://patch-diff.githubusercontent.com/sofroniewn/rosa/actions
Projects https://patch-diff.githubusercontent.com/sofroniewn/rosa/projects
Security https://patch-diff.githubusercontent.com/sofroniewn/rosa/security
Insights https://patch-diff.githubusercontent.com/sofroniewn/rosa/pulse
Brancheshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/branches
Tagshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tags
https://patch-diff.githubusercontent.com/sofroniewn/rosa/branches
https://patch-diff.githubusercontent.com/sofroniewn/rosa/tags
106 Commitshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/commits/main/
https://patch-diff.githubusercontent.com/sofroniewn/rosa/commits/main/
.githubhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/.github
.githubhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/.github
assetshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/assets
assetshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/assets
confhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/conf
confhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/conf
docshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/docs
docshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/docs
notebookshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/notebooks
notebookshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/notebooks
rosahttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/rosa
rosahttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/rosa
scriptshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/scripts
scriptshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/scripts
testshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/tests
testshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/tree/main/tests
.editorconfighttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/.editorconfig
.editorconfighttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/.editorconfig
.gitignorehttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/.gitignore
.travis.ymlhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/.travis.yml
.travis.ymlhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/.travis.yml
AUTHORS.rsthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/AUTHORS.rst
AUTHORS.rsthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/AUTHORS.rst
CONTRIBUTING.rsthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/CONTRIBUTING.rst
CONTRIBUTING.rsthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/CONTRIBUTING.rst
HISTORY.rsthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/HISTORY.rst
HISTORY.rsthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/HISTORY.rst
LICENSEhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/LICENSE
MANIFEST.inhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/MANIFEST.in
MANIFEST.inhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/MANIFEST.in
Makefilehttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/Makefile
Makefilehttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/Makefile
README.mdhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/README.md
requirements_dev.txthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/requirements_dev.txt
requirements_dev.txthttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/requirements_dev.txt
setup.cfghttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/setup.cfg
setup.cfghttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/setup.cfg
setup.pyhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/setup.py
tox.inihttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/tox.ini
tox.inihttps://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/tox.ini
READMEhttps://patch-diff.githubusercontent.com/sofroniewn/rosa
Contributinghttps://patch-diff.githubusercontent.com/sofroniewn/rosa
Licensehttps://patch-diff.githubusercontent.com/sofroniewn/rosa
https://patch-diff.githubusercontent.com/sofroniewn/rosa#rosa
https://patch-diff.githubusercontent.com/sofroniewn/rosa#modeling-single-cell-gene-expression-from-the-genome
Enformerhttps://www.nature.com/articles/s41592-021-01252-x
Geneformerhttps://www.nature.com/articles/s41586-023-06139-9
scGPThttps://www.biorxiv.org/content/10.1101/2023.04.30.538439v2
Saturnhttps://www.biorxiv.org/content/10.1101/2023.02.03.526939v2
https://patch-diff.githubusercontent.com/sofroniewn/rosa#rosa-approach
https://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/assets/intro.png
Tabula Sapienshttps://tabula-sapiens-portal.ds.czbiohub.org/
CZ CellXGene portalhttps://cellxgene.cziscience.com/
pre-trained implementation of enformerhttps://github.com/lucidrains/enformer-pytorch
https://patch-diff.githubusercontent.com/sofroniewn/rosa/blob/main/assets/model.png
https://patch-diff.githubusercontent.com/sofroniewn/rosa#results-on-pause
https://patch-diff.githubusercontent.com/sofroniewn/rosa#acknowledgements
enformer-pytorchhttps://github.com/lucidrains/enformer-pytorch
Readme https://patch-diff.githubusercontent.com/sofroniewn/rosa#readme-ov-file
View license https://patch-diff.githubusercontent.com/sofroniewn/rosa#License-1-ov-file
Contributing https://patch-diff.githubusercontent.com/sofroniewn/rosa#contributing-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/sofroniewn/rosa
Activityhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/activity
1 starhttps://patch-diff.githubusercontent.com/sofroniewn/rosa/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/sofroniewn/rosa/watchers
0 forkshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fsofroniewn%2Frosa&report=sofroniewn+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/sofroniewn/rosa/releases
Packages 0https://patch-diff.githubusercontent.com/users/sofroniewn/packages?repo_name=rosa
Please reload this pagehttps://patch-diff.githubusercontent.com/sofroniewn/rosa
Jupyter Notebook 98.8% https://patch-diff.githubusercontent.com/sofroniewn/rosa/search?l=jupyter-notebook
Python 1.2% https://patch-diff.githubusercontent.com/sofroniewn/rosa/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.