René's URL Explorer Experiment

{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"Using preseq 3.2.0 with BAM as input","articleBody":"Hello,\r\n\r\nOne of our pipelines currently uses preseq 2.0 and uses BAM files as an input to preseq. I recently attempted to upgrade to 3.2.0 and, after following the instructions on the GITHUB readme as well as the ReadTheDocs site, I was unable to get the program to process `.bam` files. Could you please clarify the steps to building preseq ( I ensured that HTSlib was installed prior to building preseq per the docs) to process .bam files as well at the proper syntax with regards to the input file and whether or not the `-B` flag is required? The CLI does not show the `-B` option but it is referenced in the docs specifically for `.bam` files.\r\n\r\nThank you!","author":{"url":"https://github.com/donaldcampbelljr","@type":"Person","name":"donaldcampbelljr"},"datePublished":"2024-10-04T14:35:31.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":6},"url":"https://github.com/74/preseq/issues/74"}