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{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"about to-mr function","articleBody":"Hi. I am using gc_extrap to process some BAM files, and my version of Preseq is 3.2.0. According to your usage examples, BAM files need to be converted to MR files. However, I found that Preseq version 3.2.0 does not include a function to perform this conversion. While searching other websites, I discovered that Preseq previously had functions such as BAM2MR or to-mr, but these are not present in version 3.2.0. Currently, Preseq includes functions like c_curve, lc_extrap, gc_extrap, bound_pop, and pop_size. I am using Bedtools to convert these BAM files to BED files and then processing the BED files with the command '`preseq gc_extrap -B -o test1.txt test.bed`' instead of using MR files. Can I run gc_extrap like this?","author":{"url":"https://github.com/SYSUMSD","@type":"Person","name":"SYSUMSD"},"datePublished":"2024-04-07T07:25:13.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":1},"url":"https://github.com/72/preseq/issues/72"}