René's URL Explorer Experiment


Title: preseq lc_extrap · Issue #63 · smithlabcode/preseq · GitHub

Open Graph Title: preseq lc_extrap · Issue #63 · smithlabcode/preseq

X Title: preseq lc_extrap · Issue #63 · smithlabcode/preseq

Description: I have trouble using preseq lc_extrap command, basically, it tells me my bam file is unsorted. However, I sorted the bam file and then reran it. The same error came out. Commands and errors are as below... Also, it doesn't show up which ...

Open Graph Description: I have trouble using preseq lc_extrap command, basically, it tells me my bam file is unsorted. However, I sorted the bam file and then reran it. The same error came out. Commands and errors are as ...

X Description: I have trouble using preseq lc_extrap command, basically, it tells me my bam file is unsorted. However, I sorted the bam file and then reran it. The same error came out. Commands and errors are as ...

Opengraph URL: https://github.com/smithlabcode/preseq/issues/63

X: @github

direct link

Domain: patch-diff.githubusercontent.com


Hey, it has json ld scripts:
{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"preseq lc_extrap ","articleBody":"I have trouble using preseq lc_extrap command, basically, it tells me my bam file is unsorted. However, I sorted the bam file and then reran it. The same error came out. Commands and errors are as below... Also, it doesn't show up which reads are unsorted.\r\n\r\n\r\nsamtools sort -@ 30 -o ./A_merge_mapped.PT.sort.bam -T A ./A_merge_mapped.PT.bam\r\npreseq lc_extrap -extrap 2.1e9 -step 1e8 -output ./out.preseq.txt ./A_merge_mapped.PT.sort.bam\r\nERROR:\tlocations unsorted in: ./A_merge_mapped.PT.sort.bam","author":{"url":"https://github.com/DittmanC","@type":"Person","name":"DittmanC"},"datePublished":"2022-10-13T01:54:28.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":2},"url":"https://github.com/63/preseq/issues/63"}

route-pattern/_view_fragments/issues/show/:user_id/:repository/:id/issue_layout(.:format)
route-controllervoltron_issues_fragments
route-actionissue_layout
fetch-noncev2:c365b6d6-d21d-246a-cb36-5f2d373c79bc
current-catalog-service-hash81bb79d38c15960b92d99bca9288a9108c7a47b18f2423d0f6438c5b7bcd2114
request-id9700:5D9CD:14BFFE5:1B4126A:698D6C84
html-safe-nonce7d8f569e52b6a723cba770614c3279868cc86d5dbc0cc91a9c8706d4ee450125
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5NzAwOjVEOUNEOjE0QkZGRTU6MUI0MTI2QTo2OThENkM4NCIsInZpc2l0b3JfaWQiOiI3NTY2OTM4MjEwODU4MDU3MDAiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac82b3e44bcfb89e295c432b06352b252247834c1dd99b2d15590608bb0f12a43a
hovercard-subject-tagissue:1407017511
github-keyboard-shortcutsrepository,issues,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///voltron/issues_fragments/issue_layout
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/_view_fragments/issues/show/smithlabcode/preseq/63/issue_layout
twitter:imagehttps://opengraph.githubassets.com/09b62e82d722b272784c2e436fe5381631f3582466a8966c0373d840d6644472/smithlabcode/preseq/issues/63
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/09b62e82d722b272784c2e436fe5381631f3582466a8966c0373d840d6644472/smithlabcode/preseq/issues/63
og:image:altI have trouble using preseq lc_extrap command, basically, it tells me my bam file is unsorted. However, I sorted the bam file and then reran it. The same error came out. Commands and errors are as ...
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
og:author:usernameDittmanC
hostnamegithub.com
expected-hostnamegithub.com
Nonec0818105fa276287e9369cfdefa0a0fa7953719791ceff9b94d69623c0a4fe8a
turbo-cache-controlno-preview
go-importgithub.com/smithlabcode/preseq git https://github.com/smithlabcode/preseq.git
octolytics-dimension-user_id7265986
octolytics-dimension-user_loginsmithlabcode
octolytics-dimension-repository_id19129917
octolytics-dimension-repository_nwosmithlabcode/preseq
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id19129917
octolytics-dimension-repository_network_root_nwosmithlabcode/preseq
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release715890fa442134f528fb422ab338c0ad55c7a025
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/smithlabcode/preseq/issues/63#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fsmithlabcode%2Fpreseq%2Fissues%2F63
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fsmithlabcode%2Fpreseq%2Fissues%2F63
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fvoltron%2Fissues_fragments%2Fissue_layout&source=header-repo&source_repo=smithlabcode%2Fpreseq
Reloadhttps://patch-diff.githubusercontent.com/smithlabcode/preseq/issues/63
Reloadhttps://patch-diff.githubusercontent.com/smithlabcode/preseq/issues/63
Reloadhttps://patch-diff.githubusercontent.com/smithlabcode/preseq/issues/63
smithlabcode https://patch-diff.githubusercontent.com/smithlabcode
preseqhttps://patch-diff.githubusercontent.com/smithlabcode/preseq
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fsmithlabcode%2Fpreseq
Fork 17 https://patch-diff.githubusercontent.com/login?return_to=%2Fsmithlabcode%2Fpreseq
Star 94 https://patch-diff.githubusercontent.com/login?return_to=%2Fsmithlabcode%2Fpreseq
Code https://patch-diff.githubusercontent.com/smithlabcode/preseq
Issues 18 https://patch-diff.githubusercontent.com/smithlabcode/preseq/issues
Pull requests 1 https://patch-diff.githubusercontent.com/smithlabcode/preseq/pulls
Actions https://patch-diff.githubusercontent.com/smithlabcode/preseq/actions
Projects 0 https://patch-diff.githubusercontent.com/smithlabcode/preseq/projects
Wiki https://patch-diff.githubusercontent.com/smithlabcode/preseq/wiki
Security 0 https://patch-diff.githubusercontent.com/smithlabcode/preseq/security
Insights https://patch-diff.githubusercontent.com/smithlabcode/preseq/pulse
Code https://patch-diff.githubusercontent.com/smithlabcode/preseq
Issues https://patch-diff.githubusercontent.com/smithlabcode/preseq/issues
Pull requests https://patch-diff.githubusercontent.com/smithlabcode/preseq/pulls
Actions https://patch-diff.githubusercontent.com/smithlabcode/preseq/actions
Projects https://patch-diff.githubusercontent.com/smithlabcode/preseq/projects
Wiki https://patch-diff.githubusercontent.com/smithlabcode/preseq/wiki
Security https://patch-diff.githubusercontent.com/smithlabcode/preseq/security
Insights https://patch-diff.githubusercontent.com/smithlabcode/preseq/pulse
New issuehttps://patch-diff.githubusercontent.com/login?return_to=https://github.com/smithlabcode/preseq/issues/63
New issuehttps://patch-diff.githubusercontent.com/login?return_to=https://github.com/smithlabcode/preseq/issues/63
preseq lc_extrap https://patch-diff.githubusercontent.com/smithlabcode/preseq/issues/63#top
https://github.com/DittmanC
https://github.com/DittmanC
DittmanChttps://github.com/DittmanC
on Oct 13, 2022https://github.com/smithlabcode/preseq/issues/63#issue-1407017511
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.