René's URL Explorer Experiment


Title: GitHub - scverse/spatialdata: An open and interoperable data framework for spatial omics data

Open Graph Title: GitHub - scverse/spatialdata: An open and interoperable data framework for spatial omics data

X Title: GitHub - scverse/spatialdata: An open and interoperable data framework for spatial omics data

Description: An open and interoperable data framework for spatial omics data - scverse/spatialdata

Open Graph Description: An open and interoperable data framework for spatial omics data - scverse/spatialdata

X Description: An open and interoperable data framework for spatial omics data - scverse/spatialdata

Opengraph URL: https://github.com/scverse/spatialdata

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:2b66d6a1-0a0b-2bae-8397-8344c6a4f80f
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idBC2E:14FF4:1A62552:239D425:6973F500
html-safe-nonce0199fc0d30791edb85c1fb849944326d7e0f8ddf23ec9f2dd37c8cabe5c805eb
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCQzJFOjE0RkY0OjFBNjI1NTI6MjM5RDQyNTo2OTczRjUwMCIsInZpc2l0b3JfaWQiOiI3NjQwOTM2NTQ3MjM4NTQwNTQ0IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmaca1ddda107430c3d71c4b8135b91859a71a33e8925b3aa37c1fc14e4ef42336e1
hovercard-subject-tagrepository:487366481
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/scverse/spatialdata
twitter:imagehttps://opengraph.githubassets.com/b22a10e973bf08801e92e936f03ee1f69b0d7c94800895da54552b36445fdfb1/scverse/spatialdata
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/b22a10e973bf08801e92e936f03ee1f69b0d7c94800895da54552b36445fdfb1/scverse/spatialdata
og:image:altAn open and interoperable data framework for spatial omics data - scverse/spatialdata
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Noneedd166dbd7a8c69304dd0f786a2ceae171d7a532d7f82516d7b971b6a831123e
turbo-cache-controlno-preview
go-importgithub.com/scverse/spatialdata git https://github.com/scverse/spatialdata.git
octolytics-dimension-user_id95305807
octolytics-dimension-user_loginscverse
octolytics-dimension-repository_id487366481
octolytics-dimension-repository_nwoscverse/spatialdata
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id487366481
octolytics-dimension-repository_network_root_nwoscverse/spatialdata
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release7f2d62d773fd1f2c679e2ea93329a72fda65310a
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/scverse/spatialdata#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fscverse%2Fspatialdata
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fscverse%2Fspatialdata
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=scverse%2Fspatialdata
Reloadhttps://patch-diff.githubusercontent.com/scverse/spatialdata
Reloadhttps://patch-diff.githubusercontent.com/scverse/spatialdata
Reloadhttps://patch-diff.githubusercontent.com/scverse/spatialdata
scverse https://patch-diff.githubusercontent.com/scverse
spatialdatahttps://patch-diff.githubusercontent.com/scverse/spatialdata
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fscverse%2Fspatialdata
Fork 79 https://patch-diff.githubusercontent.com/login?return_to=%2Fscverse%2Fspatialdata
Star 340 https://patch-diff.githubusercontent.com/login?return_to=%2Fscverse%2Fspatialdata
spatialdata.scverse.org/https://spatialdata.scverse.org/
BSD-3-Clause license https://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/LICENSE
340 stars https://patch-diff.githubusercontent.com/scverse/spatialdata/stargazers
79 forks https://patch-diff.githubusercontent.com/scverse/spatialdata/forks
Branches https://patch-diff.githubusercontent.com/scverse/spatialdata/branches
Tags https://patch-diff.githubusercontent.com/scverse/spatialdata/tags
Activity https://patch-diff.githubusercontent.com/scverse/spatialdata/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fscverse%2Fspatialdata
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fscverse%2Fspatialdata
Code https://patch-diff.githubusercontent.com/scverse/spatialdata
Issues 254 https://patch-diff.githubusercontent.com/scverse/spatialdata/issues
Pull requests 8 https://patch-diff.githubusercontent.com/scverse/spatialdata/pulls
Discussions https://patch-diff.githubusercontent.com/scverse/spatialdata/discussions
Actions https://patch-diff.githubusercontent.com/scverse/spatialdata/actions
Projects 1 https://patch-diff.githubusercontent.com/scverse/spatialdata/projects
Security 0 https://patch-diff.githubusercontent.com/scverse/spatialdata/security
Insights https://patch-diff.githubusercontent.com/scverse/spatialdata/pulse
Code https://patch-diff.githubusercontent.com/scverse/spatialdata
Issues https://patch-diff.githubusercontent.com/scverse/spatialdata/issues
Pull requests https://patch-diff.githubusercontent.com/scverse/spatialdata/pulls
Discussions https://patch-diff.githubusercontent.com/scverse/spatialdata/discussions
Actions https://patch-diff.githubusercontent.com/scverse/spatialdata/actions
Projects https://patch-diff.githubusercontent.com/scverse/spatialdata/projects
Security https://patch-diff.githubusercontent.com/scverse/spatialdata/security
Insights https://patch-diff.githubusercontent.com/scverse/spatialdata/pulse
Brancheshttps://patch-diff.githubusercontent.com/scverse/spatialdata/branches
Tagshttps://patch-diff.githubusercontent.com/scverse/spatialdata/tags
https://patch-diff.githubusercontent.com/scverse/spatialdata/branches
https://patch-diff.githubusercontent.com/scverse/spatialdata/tags
1,151 Commitshttps://patch-diff.githubusercontent.com/scverse/spatialdata/commits/main/
https://patch-diff.githubusercontent.com/scverse/spatialdata/commits/main/
.githubhttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/.github
.githubhttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/.github
benchmarkshttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/benchmarks
benchmarkshttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/benchmarks
docshttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/docs
docshttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/docs
src/spatialdatahttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/src/spatialdata
src/spatialdatahttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/src/spatialdata
testshttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/tests
testshttps://patch-diff.githubusercontent.com/scverse/spatialdata/tree/main/tests
.bumpversion.cfghttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.bumpversion.cfg
.bumpversion.cfghttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.bumpversion.cfg
.editorconfighttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.editorconfig
.editorconfighttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.editorconfig
.gitignorehttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.gitignore
.gitmoduleshttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.gitmodules
.gitmoduleshttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.gitmodules
.mypy.inihttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.mypy.ini
.mypy.inihttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.mypy.ini
.pre-commit-config.yamlhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.pre-commit-config.yaml
.pre-commit-config.yamlhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.pre-commit-config.yaml
.readthedocs.yamlhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.readthedocs.yaml
.readthedocs.yamlhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/.readthedocs.yaml
CHANGELOG.mdhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/CHANGELOG.md
CHANGELOG.mdhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/CHANGELOG.md
Dockerfilehttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/Dockerfile
Dockerfilehttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/Dockerfile
LICENSEhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/README.md
asv.conf.jsonhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/asv.conf.json
asv.conf.jsonhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/asv.conf.json
pyproject.tomlhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/pyproject.toml
pyproject.tomlhttps://patch-diff.githubusercontent.com/scverse/spatialdata/blob/main/pyproject.toml
READMEhttps://patch-diff.githubusercontent.com/scverse/spatialdata
Code of conducthttps://patch-diff.githubusercontent.com/scverse/spatialdata
Contributinghttps://patch-diff.githubusercontent.com/scverse/spatialdata
BSD-3-Clause licensehttps://patch-diff.githubusercontent.com/scverse/spatialdata
https://github.com/scverse/spatialdata/blob/main/docs/_static/img/spatialdata_horizontal.png?raw=true
https://patch-diff.githubusercontent.com/scverse/spatialdata#spatialdata-an-open-and-universal-framework-for-processing-spatial-omics-data
https://github.com/scverse/spatialdata/actions/workflows/test.yaml
https://results.pre-commit.ci/latest/github/scverse/spatialdata/main
https://codecov.io/gh/scverse/spatialdata
https://spatialdata.scverse.org/en/latest/
https://zenodo.org/badge/latestdoi/487366481
https://pepy.tech/project/spatialdata
https://github.com/scverse/spatialdata/actions/workflows/release.yaml
https://pypi.org/project/spatialdata/
https://anaconda.org/conda-forge/spatialdata
spatialdata-iohttps://github.com/scverse/spatialdata-io
spatialdata-plothttps://github.com/scverse/spatialdata-plot
napari-spatialdatahttps://github.com/scverse/napari-spatialdata
websitehttps://scverse.org
governancehttps://scverse.org/about/roles
NumFOCUShttps://numfocus.org/
donationhttps://numfocus.org/donate-to-scverse
https://numfocus.org/project/scverse
https://private-user-images.githubusercontent.com/1120672/238749897-cb91071f-12a7-4b8e-9430-2b3a0f65e52f.png?jwt=eyJ0eXAiOiJKV1QiLCJhbGciOiJIUzI1NiJ9.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.Y0TDHxnsw4cYA-XyIQ_-rwW_ri1G1KgSoIcNDR-BCz0
OME-NGFFhttps://ngff.openmicroscopy.org/latest/
https://patch-diff.githubusercontent.com/scverse/spatialdata#getting-started
documentationhttps://spatialdata.scverse.org/en/stable/
API documentationhttps://spatialdata.scverse.org/en/stable/api.html
Design dochttps://spatialdata.scverse.org/en/stable/design_doc.html
Example notebookshttps://spatialdata.scverse.org/en/stable/tutorials/notebooks/notebooks.html
spatialdata-iohttps://github.com/scverse/spatialdata-io
https://patch-diff.githubusercontent.com/scverse/spatialdata#installation
installation instructionshttps://spatialdata.scverse.org/en/stable/installation.html
https://patch-diff.githubusercontent.com/scverse/spatialdata#limitations
https://patch-diff.githubusercontent.com/scverse/spatialdata#contact
scverse Zuliphttps://scverse.zulipchat.com/#narrow/stream/315824-spatial
scverse discourse forumhttps://discourse.scverse.org/
GitHub issue trackerhttps://github.com/scverse/spatialdata/issues
schedule herehttps://scverse.zulipchat.com/#narrow/channel/315824-spatial/topic/spatialdata.20meetings/near/540899686
Zuliphttps://imagesc.zulipchat.com/#narrow/stream/329057-scverse/topic/spatialdata.20announcements
https://patch-diff.githubusercontent.com/scverse/spatialdata#citation
https://doi.org/10.1038/s41592-024-02212-xhttps://doi.org/10.1038/s41592-024-02212-x
spatialdata.scverse.org/https://spatialdata.scverse.org/
Readme https://patch-diff.githubusercontent.com/scverse/spatialdata#readme-ov-file
BSD-3-Clause license https://patch-diff.githubusercontent.com/scverse/spatialdata#BSD-3-Clause-1-ov-file
Code of conduct https://patch-diff.githubusercontent.com/scverse/spatialdata#coc-ov-file
Contributing https://patch-diff.githubusercontent.com/scverse/spatialdata#contributing-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/scverse/spatialdata
Activityhttps://patch-diff.githubusercontent.com/scverse/spatialdata/activity
Custom propertieshttps://patch-diff.githubusercontent.com/scverse/spatialdata/custom-properties
340 starshttps://patch-diff.githubusercontent.com/scverse/spatialdata/stargazers
12 watchinghttps://patch-diff.githubusercontent.com/scverse/spatialdata/watchers
79 forkshttps://patch-diff.githubusercontent.com/scverse/spatialdata/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fscverse%2Fspatialdata&report=scverse+%28user%29
Releases 42https://patch-diff.githubusercontent.com/scverse/spatialdata/releases
v0.6.1 Latest Nov 15, 2025 https://patch-diff.githubusercontent.com/scverse/spatialdata/releases/tag/v0.6.1
+ 41 releaseshttps://patch-diff.githubusercontent.com/scverse/spatialdata/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/scverse/packages?repo_name=spatialdata
Please reload this pagehttps://patch-diff.githubusercontent.com/scverse/spatialdata
Used by 163https://patch-diff.githubusercontent.com/scverse/spatialdata/network/dependents
+ 155 https://patch-diff.githubusercontent.com/scverse/spatialdata/network/dependents
Contributors 34https://patch-diff.githubusercontent.com/scverse/spatialdata/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/scverse/spatialdata
+ 20 contributorshttps://patch-diff.githubusercontent.com/scverse/spatialdata/graphs/contributors
Python 99.9% https://patch-diff.githubusercontent.com/scverse/spatialdata/search?l=python
Dockerfile 0.1% https://patch-diff.githubusercontent.com/scverse/spatialdata/search?l=dockerfile
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.