Title: Failed to use custom python environment on arm64 mac · Issue #6 · scijava/scripting-python · GitHub
Open Graph Title: Failed to use custom python environment on arm64 mac · Issue #6 · scijava/scripting-python
X Title: Failed to use custom python environment on arm64 mac · Issue #6 · scijava/scripting-python
Description: I created a mamba environment: mamba create -n ijseg python=3.11 -y mamba activate ijseg pip install tensorflow==2.15 cellpose==4.0.6 stardist==0.9.0 csbdeep==0.8.0 pyimagej==1.7.0 numpy==1.26.4 After pointing Fiji to this environment an...
Open Graph Description: I created a mamba environment: mamba create -n ijseg python=3.11 -y mamba activate ijseg pip install tensorflow==2.15 cellpose==4.0.6 stardist==0.9.0 csbdeep==0.8.0 pyimagej==1.7.0 numpy==1.26.4 Af...
X Description: I created a mamba environment: mamba create -n ijseg python=3.11 -y mamba activate ijseg pip install tensorflow==2.15 cellpose==4.0.6 stardist==0.9.0 csbdeep==0.8.0 pyimagej==1.7.0 numpy==1.26.4 Af...
Opengraph URL: https://github.com/scijava/scripting-python/issues/6
X: @github
Domain: patch-diff.githubusercontent.com
{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"Failed to use custom python environment on arm64 mac","articleBody":"I created a mamba environment:\n```\nmamba create -n ijseg python=3.11 -y\nmamba activate ijseg\npip install tensorflow==2.15 cellpose==4.0.6 stardist==0.9.0 csbdeep==0.8.0 pyimagej==1.7.0 numpy==1.26.4\n```\n\nAfter pointing Fiji to this environment and starting in python mode, I got the error:\n```\nbus error ./Fiji.app/Contents/MacOS/fiji-macos-arm64\n```\n\nI was able to start in python mode when using the \"rebuild environment\" button so it would seem there were simply things missing from my custom environment (at the least, appose-python it looks like).","author":{"url":"https://github.com/hinerm","@type":"Person","name":"hinerm"},"datePublished":"2025-08-23T18:19:03.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":0},"url":"https://github.com/6/scripting-python/issues/6"}
| route-pattern | /_view_fragments/issues/show/:user_id/:repository/:id/issue_layout(.:format) |
| route-controller | voltron_issues_fragments |
| route-action | issue_layout |
| fetch-nonce | v2:68e179ba-28aa-06fd-c27d-522d1e5858a1 |
| current-catalog-service-hash | 81bb79d38c15960b92d99bca9288a9108c7a47b18f2423d0f6438c5b7bcd2114 |
| request-id | DDD8:326BEA:FD6190:14FB60A:696EF16B |
| html-safe-nonce | 72dcec899e89b607e572996d52f3c90b7a4ef29e9d684414869057b3d3bf228a |
| visitor-payload | eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJEREQ4OjMyNkJFQTpGRDYxOTA6MTRGQjYwQTo2OTZFRjE2QiIsInZpc2l0b3JfaWQiOiIxMDk5MzAzMTgxODk3MTAxNjc1IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0= |
| visitor-hmac | 4889c02eca4f1338c3f6156b09d2d09cf7476cc4333489fd4f2b09de6f3f1444 |
| hovercard-subject-tag | issue:3348590228 |
| github-keyboard-shortcuts | repository,issues,copilot |
| google-site-verification | Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I |
| octolytics-url | https://collector.github.com/github/collect |
| analytics-location | / |
| fb:app_id | 1401488693436528 |
| apple-itunes-app | app-id=1477376905, app-argument=https://github.com/_view_fragments/issues/show/scijava/scripting-python/6/issue_layout |
| twitter:image | https://opengraph.githubassets.com/581fcaa9572c8eef8dd337bbffe05444e6d1f6d36c151289583a1f98f416deb4/scijava/scripting-python/issues/6 |
| twitter:card | summary_large_image |
| og:image | https://opengraph.githubassets.com/581fcaa9572c8eef8dd337bbffe05444e6d1f6d36c151289583a1f98f416deb4/scijava/scripting-python/issues/6 |
| og:image:alt | I created a mamba environment: mamba create -n ijseg python=3.11 -y mamba activate ijseg pip install tensorflow==2.15 cellpose==4.0.6 stardist==0.9.0 csbdeep==0.8.0 pyimagej==1.7.0 numpy==1.26.4 Af... |
| og:image:width | 1200 |
| og:image:height | 600 |
| og:site_name | GitHub |
| og:type | object |
| og:author:username | hinerm |
| hostname | github.com |
| expected-hostname | github.com |
| None | b278ad162d35332b6de714dfb005de04386c4d92df6475522bef910f491a35ee |
| turbo-cache-control | no-preview |
| go-import | github.com/scijava/scripting-python git https://github.com/scijava/scripting-python.git |
| octolytics-dimension-user_id | 1262770 |
| octolytics-dimension-user_login | scijava |
| octolytics-dimension-repository_id | 439661642 |
| octolytics-dimension-repository_nwo | scijava/scripting-python |
| octolytics-dimension-repository_public | true |
| octolytics-dimension-repository_is_fork | false |
| octolytics-dimension-repository_network_root_id | 439661642 |
| octolytics-dimension-repository_network_root_nwo | scijava/scripting-python |
| turbo-body-classes | logged-out env-production page-responsive |
| disable-turbo | false |
| browser-stats-url | https://api.github.com/_private/browser/stats |
| browser-errors-url | https://api.github.com/_private/browser/errors |
| release | 39aed5006635ab6f45e6b77d23e73b08a00272a3 |
| ui-target | full |
| theme-color | #1e2327 |
| color-scheme | light dark |
Links:
Viewport: width=device-width