René's URL Explorer Experiment


Title: GitHub - pinellolab/STREAM: STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

Open Graph Title: GitHub - pinellolab/STREAM: STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

X Title: GitHub - pinellolab/STREAM: STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

Description: STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data - pinellolab/STREAM

Open Graph Description: STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data - pinellolab/STREAM

X Description: STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data - pinellolab/STREAM

Opengraph URL: https://github.com/pinellolab/STREAM

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:26856854-ed92-0569-b11a-4b1a91dc6a1a
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idDC62:61BFE:172587C:2059258:69821F06
html-safe-nonce5487be008c1993f65eced6ed6e332671a230fcff6954924546f94c1625bde77a
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJEQzYyOjYxQkZFOjE3MjU4N0M6MjA1OTI1ODo2OTgyMUYwNiIsInZpc2l0b3JfaWQiOiI2MDI1ODM4MzM2Mzc0MDg3NDMwIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmaca3d41210e822fff24ffcc9aed71d7c794fcc74b8baa739c905c150c9a7648433
hovercard-subject-tagrepository:129318528
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/pinellolab/STREAM
twitter:imagehttps://opengraph.githubassets.com/47c09af5332cd745875a040a627ba3fbc3a188a3d322efcfb0a4286157d62b5d/pinellolab/STREAM
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/47c09af5332cd745875a040a627ba3fbc3a188a3d322efcfb0a4286157d62b5d/pinellolab/STREAM
og:image:altSTREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data - pinellolab/STREAM
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonec5d01132ac10b0b45b88f4c1c8790502d669eb065ff383dc5e4757c174f3380f
turbo-cache-controlno-preview
go-importgithub.com/pinellolab/STREAM git https://github.com/pinellolab/STREAM.git
octolytics-dimension-user_id30343453
octolytics-dimension-user_loginpinellolab
octolytics-dimension-repository_id129318528
octolytics-dimension-repository_nwopinellolab/STREAM
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id129318528
octolytics-dimension-repository_network_root_nwopinellolab/STREAM
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasefabca968a4d0c1d630cbf4ea410949b58bc6bd54
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/pinellolab/STREAM#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fpinellolab%2FSTREAM
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fpinellolab%2FSTREAM
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=pinellolab%2FSTREAM
Reloadhttps://patch-diff.githubusercontent.com/pinellolab/STREAM
Reloadhttps://patch-diff.githubusercontent.com/pinellolab/STREAM
Reloadhttps://patch-diff.githubusercontent.com/pinellolab/STREAM
pinellolab https://patch-diff.githubusercontent.com/pinellolab
STREAMhttps://patch-diff.githubusercontent.com/pinellolab/STREAM
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fpinellolab%2FSTREAM
Fork 51 https://patch-diff.githubusercontent.com/login?return_to=%2Fpinellolab%2FSTREAM
Star 179 https://patch-diff.githubusercontent.com/login?return_to=%2Fpinellolab%2FSTREAM
stream.pinellolab.orghttp://stream.pinellolab.org
AGPL-3.0 license https://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/LICENSE
179 stars https://patch-diff.githubusercontent.com/pinellolab/STREAM/stargazers
51 forks https://patch-diff.githubusercontent.com/pinellolab/STREAM/forks
Branches https://patch-diff.githubusercontent.com/pinellolab/STREAM/branches
Tags https://patch-diff.githubusercontent.com/pinellolab/STREAM/tags
Activity https://patch-diff.githubusercontent.com/pinellolab/STREAM/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fpinellolab%2FSTREAM
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fpinellolab%2FSTREAM
Code https://patch-diff.githubusercontent.com/pinellolab/STREAM
Issues 54 https://patch-diff.githubusercontent.com/pinellolab/STREAM/issues
Pull requests 0 https://patch-diff.githubusercontent.com/pinellolab/STREAM/pulls
Actions https://patch-diff.githubusercontent.com/pinellolab/STREAM/actions
Projects 0 https://patch-diff.githubusercontent.com/pinellolab/STREAM/projects
Security 0 https://patch-diff.githubusercontent.com/pinellolab/STREAM/security
Insights https://patch-diff.githubusercontent.com/pinellolab/STREAM/pulse
Code https://patch-diff.githubusercontent.com/pinellolab/STREAM
Issues https://patch-diff.githubusercontent.com/pinellolab/STREAM/issues
Pull requests https://patch-diff.githubusercontent.com/pinellolab/STREAM/pulls
Actions https://patch-diff.githubusercontent.com/pinellolab/STREAM/actions
Projects https://patch-diff.githubusercontent.com/pinellolab/STREAM/projects
Security https://patch-diff.githubusercontent.com/pinellolab/STREAM/security
Insights https://patch-diff.githubusercontent.com/pinellolab/STREAM/pulse
Brancheshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/branches
Tagshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/tags
https://patch-diff.githubusercontent.com/pinellolab/STREAM/branches
https://patch-diff.githubusercontent.com/pinellolab/STREAM/tags
471 Commitshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/commits/master/
https://patch-diff.githubusercontent.com/pinellolab/STREAM/commits/master/
.github/workflowshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/tree/master/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/tree/master/.github/workflows
streamhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/tree/master/stream
streamhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/tree/master/stream
tutorialhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/tree/master/tutorial
tutorialhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/tree/master/tutorial
.dockerignorehttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/.dockerignore
.dockerignorehttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/.dockerignore
.gitignorehttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/.gitignore
.travis.ymlhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/.travis.yml
.travis.ymlhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/.travis.yml
CODE_OF_CONDUCT.mdhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/CODE_OF_CONDUCT.md
CODE_OF_CONDUCT.mdhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/CODE_OF_CONDUCT.md
Dockerfilehttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/Dockerfile
Dockerfilehttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/Dockerfile
LICENSEhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/LICENSE
MANIFEST.inhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/MANIFEST.in
MANIFEST.inhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/MANIFEST.in
README.mdhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/README.md
setup.cfghttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/setup.cfg
setup.cfghttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/setup.cfg
setup.pyhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/blob/master/setup.py
READMEhttps://patch-diff.githubusercontent.com/pinellolab/STREAM
Code of conducthttps://patch-diff.githubusercontent.com/pinellolab/STREAM
AGPL-3.0 licensehttps://patch-diff.githubusercontent.com/pinellolab/STREAM
http://bioconda.github.io/recipes/stream/README.html
https://github.com/pinellolab/STREAM/actions/workflows/python-package-conda.yml
https://patch-diff.githubusercontent.com/pinellolab/STREAM#stream-latest-version-v11
https://patch-diff.githubusercontent.com/pinellolab/STREAM#latest-news
v1.0https://github.com/pinellolab/STREAM/releases/tag/v1.0
v0.4.0https://github.com/pinellolab/STREAM/releases/tag/v0.4.0
https://patch-diff.githubusercontent.com/pinellolab/STREAM#introduction
Chen H, et al. Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM.https://www.nature.com/articles/s41467-019-09670-4
https://github.com/pinellolab/STREAM/blob/stream_python2/STREAM/static/images/Figure1.png
Wolf et al. Genome Biology (2018)http://anndata.rtfd.io
stream.pinellolab.orghttp://stream.pinellolab.org/
https://bioconda.github.io/recipes/stream/README.htmlhttps://bioconda.github.io/recipes/stream/README.html
https://github.com/pinellolab/STREAMhttps://github.com/pinellolab/STREAM
https://patch-diff.githubusercontent.com/pinellolab/STREAM#installation-with-bioconda-recommended
https://www.anaconda.com/download/https://www.anaconda.com/download/
https://patch-diff.githubusercontent.com/pinellolab/STREAM#tutorial
1.1-STREAM_scRNA-seq (Bifurcation).ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/1.1.STREAM_scRNA-seq%20%28Bifurcation%29.ipynb?flush_cache=true
1.2-STREAM_scRNA-seq (Multifurcation) on 2D visulization.ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/1.2.use_vis.ipynb?flush_cache=true
1.3-STREAM_scRNA-seq (Multifurcation) on original embedding.ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/1.2.STREAM_scRNA-seq%20%28Multifurcation%29.ipynb?flush_cache=true
2.1-STREAM_scATAC-seq_peaks.ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/2.1-STREAM_scATAC-seq_peaks.ipynb?flush_cache=true
2.2-STREAM_scATAC-seq_k-mers.ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/2.2.STREAM_scATAC-seq_k-mers.ipynb?flush_cache=true
2.3-STREAM_scATAC-seq_motifs.ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/2.3.STREAM_scATAC-seq_motifs.ipynb?flush_cache=true
3-STREAM_mapping.ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/3.STREAM_mapping.ipynb?flush_cache=true
4-STREAM_complex_trajectories.ipynbhttps://nbviewer.jupyter.org/github/pinellolab/STREAM/blob/master/tutorial/4.STREAM_complex_trajectories.ipynb?flush_cache=true
herehttps://github.com/pinellolab/STREAM/tree/master/tutorial/archives/v0.4.1_and_earlier_versions
https://patch-diff.githubusercontent.com/pinellolab/STREAM#installation-with-docker
https://store.docker.com/search?offering=community&type=editionhttps://store.docker.com/search?offering=community&type=edition
http://127.0.0.1:8888http://127.0.0.1:8888
https://patch-diff.githubusercontent.com/pinellolab/STREAM#stream-interactive-website
http://stream.pinellolab.orghttps://stream.pinellolab.partners.org/
https://github.com/pinellolab/STREAM_webhttps://github.com/pinellolab/STREAM_web
stream.pinellolab.orghttp://stream.pinellolab.org
visualization https://patch-diff.githubusercontent.com/topics/visualization
python https://patch-diff.githubusercontent.com/topics/python
scrna-seq https://patch-diff.githubusercontent.com/topics/scrna-seq
lineage https://patch-diff.githubusercontent.com/topics/lineage
trajectory https://patch-diff.githubusercontent.com/topics/trajectory
singlecell https://patch-diff.githubusercontent.com/topics/singlecell
scatac-seq https://patch-diff.githubusercontent.com/topics/scatac-seq
Readme https://patch-diff.githubusercontent.com/pinellolab/STREAM#readme-ov-file
AGPL-3.0 license https://patch-diff.githubusercontent.com/pinellolab/STREAM#AGPL-3.0-1-ov-file
Code of conduct https://patch-diff.githubusercontent.com/pinellolab/STREAM#coc-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/pinellolab/STREAM
Activityhttps://patch-diff.githubusercontent.com/pinellolab/STREAM/activity
Custom propertieshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/custom-properties
179 starshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/stargazers
15 watchinghttps://patch-diff.githubusercontent.com/pinellolab/STREAM/watchers
51 forkshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fpinellolab%2FSTREAM&report=pinellolab+%28user%29
Releases 14https://patch-diff.githubusercontent.com/pinellolab/STREAM/releases
stream_v1.1 Latest Dec 18, 2021 https://patch-diff.githubusercontent.com/pinellolab/STREAM/releases/tag/v1.1
+ 13 releaseshttps://patch-diff.githubusercontent.com/pinellolab/STREAM/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/pinellolab/packages?repo_name=STREAM
Please reload this pagehttps://patch-diff.githubusercontent.com/pinellolab/STREAM
Contributors 4https://patch-diff.githubusercontent.com/pinellolab/STREAM/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/pinellolab/STREAM
Jupyter Notebook 99.0% https://patch-diff.githubusercontent.com/pinellolab/STREAM/search?l=jupyter-notebook
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.