René's URL Explorer Experiment


Title: GitHub - phucdev/TL_Bio_RE: Transfer Learning for Biomedical Relation Extraction Seminar. Applying BioBERT & SciBERT to Relation Extraction (protein-protein-interaction).

Open Graph Title: GitHub - phucdev/TL_Bio_RE: Transfer Learning for Biomedical Relation Extraction Seminar. Applying BioBERT & SciBERT to Relation Extraction (protein-protein-interaction).

X Title: GitHub - phucdev/TL_Bio_RE: Transfer Learning for Biomedical Relation Extraction Seminar. Applying BioBERT & SciBERT to Relation Extraction (protein-protein-interaction).

Description: Transfer Learning for Biomedical Relation Extraction Seminar. Applying BioBERT & SciBERT to Relation Extraction (protein-protein-interaction). - phucdev/TL_Bio_RE

Open Graph Description: Transfer Learning for Biomedical Relation Extraction Seminar. Applying BioBERT & SciBERT to Relation Extraction (protein-protein-interaction). - phucdev/TL_Bio_RE

X Description: Transfer Learning for Biomedical Relation Extraction Seminar. Applying BioBERT & SciBERT to Relation Extraction (protein-protein-interaction). - phucdev/TL_Bio_RE

Opengraph URL: https://github.com/phucdev/TL_Bio_RE

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:1cef5f12-ba0a-f149-a2d0-460c60fec900
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id932C:91DFB:1096A3:16F944:698DFC8D
html-safe-noncecafb781ad7d0e6a109408671a4d6ff001e9754cf7575856fc9ff35662d215776
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5MzJDOjkxREZCOjEwOTZBMzoxNkY5NDQ6Njk4REZDOEQiLCJ2aXNpdG9yX2lkIjoiMjkzMDA3NDM4NjcxMzkzNDk4OSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac21c9b7696e87e4a6d17b18063de2be6f8ab6ac34fc70d69921e444615c624d1b
hovercard-subject-tagrepository:227845173
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/phucdev/TL_Bio_RE
twitter:imagehttps://opengraph.githubassets.com/ef1619bedd900c88d13fcf1122c519bdff20af22c410cfb759276f40f29cdc03/phucdev/TL_Bio_RE
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/ef1619bedd900c88d13fcf1122c519bdff20af22c410cfb759276f40f29cdc03/phucdev/TL_Bio_RE
og:image:altTransfer Learning for Biomedical Relation Extraction Seminar. Applying BioBERT & SciBERT to Relation Extraction (protein-protein-interaction). - phucdev/TL_Bio_RE
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None4d76af840d3174ae6e2538f47f7ea4876a854b6ac4e6fe849e30bdd90242399f
turbo-cache-controlno-preview
go-importgithub.com/phucdev/TL_Bio_RE git https://github.com/phucdev/TL_Bio_RE.git
octolytics-dimension-user_id11077393
octolytics-dimension-user_loginphucdev
octolytics-dimension-repository_id227845173
octolytics-dimension-repository_nwophucdev/TL_Bio_RE
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id227845173
octolytics-dimension-repository_network_root_nwophucdev/TL_Bio_RE
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasec9daf44b4f7506beb4bbdaf20e9c0b4ba9a94e56
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fphucdev%2FTL_Bio_RE
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fphucdev%2FTL_Bio_RE
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=phucdev%2FTL_Bio_RE
Reloadhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Reloadhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Reloadhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
phucdev https://patch-diff.githubusercontent.com/phucdev
TL_Bio_REhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fphucdev%2FTL_Bio_RE
Fork 1 https://patch-diff.githubusercontent.com/login?return_to=%2Fphucdev%2FTL_Bio_RE
Star 7 https://patch-diff.githubusercontent.com/login?return_to=%2Fphucdev%2FTL_Bio_RE
Apache-2.0 license https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/LICENSE
7 stars https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/stargazers
1 fork https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/forks
Branches https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/branches
Tags https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tags
Activity https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fphucdev%2FTL_Bio_RE
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fphucdev%2FTL_Bio_RE
Code https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Issues 0 https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/issues
Pull requests 0 https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/pulls
Actions https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/actions
Projects 0 https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/projects
Security 0 https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/security
Insights https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/pulse
Code https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Issues https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/issues
Pull requests https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/pulls
Actions https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/actions
Projects https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/projects
Security https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/security
Insights https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/pulse
Brancheshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/branches
Tagshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tags
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/branches
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tags
96 Commitshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/commits/master/
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/commits/master/
datahttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/data
datahttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/data
modelshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/models
modelshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/models
notebookshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/notebooks
notebookshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/notebooks
tlbiorehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/tlbiore
tlbiorehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/tree/master/tlbiore
.gitignorehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/.gitignore
LICENSEhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/README.md
eval_bert_simple.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/eval_bert_simple.sh
eval_bert_simple.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/eval_bert_simple.sh
eval_rbert.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/eval_rbert.sh
eval_rbert.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/eval_rbert.sh
pred_bert_simple.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/pred_bert_simple.sh
pred_bert_simple.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/pred_bert_simple.sh
pred_rbert.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/pred_rbert.sh
pred_rbert.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/pred_rbert.sh
requirements.txthttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/requirements.txt
train_bert_simple.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/train_bert_simple.sh
train_bert_simple.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/train_bert_simple.sh
train_rbert.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/train_rbert.sh
train_rbert.shhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/blob/master/train_rbert.sh
READMEhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#tl_bio_re
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#step-1-clone-the-repository-and-prepare-the-data
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#step-2-download-pretrained-bert-models
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#download-biobert-and-convert-to-pytorch-model
https://github.com/naver/biobert-pretrainedhttps://github.com/naver/biobert-pretrained
BioBERT v1.1 (+ PubMed 1M)https://drive.google.com/file/d/1R84voFKHfWV9xjzeLzWBbmY1uOMYpnyD/view
huggingface/transformers#457 (comment)https://github.com/huggingface/transformers/issues/457#issuecomment-518403170
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#download-scibert
https://github.com/allenai/sciberthttps://github.com/allenai/scibert
SciBERT Scivocab Casedhttps://s3-us-west-2.amazonaws.com/ai2-s2-research/scibert/huggingface_pytorch/scibert_scivocab_cased.tar
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#bert
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#step-3-train-the-model-and-perform-tests
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#training
Hugging Face implementationhttps://huggingface.co/transformers/model_doc/bert.html#bertforsequenceclassification
Lee et al 2019https://arxiv.org/pdf/1901.08746.pdf
Lin et al 2019https://www.aclweb.org/anthology/W19-1908.pdf
https://github.com/monologg/R-BERThttps://github.com/monologg/R-BERT
Wu, S. and He, Y. 2019https://dl.acm.org/doi/pdf/10.1145/3357384.3358119?download=true
https://user-images.githubusercontent.com/11077393/72663484-7fab7280-39f3-11ea-8ad3-e7b9213394a4.png
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#evaluation-and-predictions
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#results
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#aimed
https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#bioinfer
Readme https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE#Apache-2.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Activityhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/activity
7 starshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/stargazers
3 watchinghttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/watchers
1 forkhttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fphucdev%2FTL_Bio_RE&report=phucdev+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/releases
Packages 0https://patch-diff.githubusercontent.com/users/phucdev/packages?repo_name=TL_Bio_RE
Please reload this pagehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Contributors 2https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE
Python 51.1% https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/search?l=python
Jupyter Notebook 45.0% https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/search?l=jupyter-notebook
Shell 3.9% https://patch-diff.githubusercontent.com/phucdev/TL_Bio_RE/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.