René's URL Explorer Experiment


Title: GitHub - phonchi/CryoParticleSegment: A framework for cryo-EM micrographs using semantic segmentation trained by projection of reconstructed 3D mask.

Open Graph Title: GitHub - phonchi/CryoParticleSegment: A framework for cryo-EM micrographs using semantic segmentation trained by projection of reconstructed 3D mask.

X Title: GitHub - phonchi/CryoParticleSegment: A framework for cryo-EM micrographs using semantic segmentation trained by projection of reconstructed 3D mask.

Description: A framework for cryo-EM micrographs using semantic segmentation trained by projection of reconstructed 3D mask. - phonchi/CryoParticleSegment

Open Graph Description: A framework for cryo-EM micrographs using semantic segmentation trained by projection of reconstructed 3D mask. - phonchi/CryoParticleSegment

X Description: A framework for cryo-EM micrographs using semantic segmentation trained by projection of reconstructed 3D mask. - phonchi/CryoParticleSegment

Opengraph URL: https://github.com/phonchi/CryoParticleSegment

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:17379d93-a533-453f-fd98-e00564eaead5
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idD89E:21A0E1:199882C:21B0C51:6992CB56
html-safe-nonce7c35f40275ddcd23f401d9d2115af539591621a6736f0148738ac5e5534952fb
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJEODlFOjIxQTBFMToxOTk4ODJDOjIxQjBDNTE6Njk5MkNCNTYiLCJ2aXNpdG9yX2lkIjoiMzEzMDk2NTQ0NzU1NTU5OTE5MCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac3d2cc004f83c2cac7ca0a1123eda34de94b846b8fb3ec9994048b93fd5213563
hovercard-subject-tagrepository:852190312
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/phonchi/CryoParticleSegment
twitter:imagehttps://opengraph.githubassets.com/440b4971260249dbdc875f8a5737f494b209485ddacbd0e319d751231361197f/phonchi/CryoParticleSegment
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/440b4971260249dbdc875f8a5737f494b209485ddacbd0e319d751231361197f/phonchi/CryoParticleSegment
og:image:altA framework for cryo-EM micrographs using semantic segmentation trained by projection of reconstructed 3D mask. - phonchi/CryoParticleSegment
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/phonchi/CryoParticleSegment git https://github.com/phonchi/CryoParticleSegment.git
octolytics-dimension-user_id11373055
octolytics-dimension-user_loginphonchi
octolytics-dimension-repository_id852190312
octolytics-dimension-repository_nwophonchi/CryoParticleSegment
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id746428134
octolytics-dimension-repository_parent_nwocyanazuki/CryoParticleSegment
octolytics-dimension-repository_network_root_id746428134
octolytics-dimension-repository_network_root_nwocyanazuki/CryoParticleSegment
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release84dcb133269e3cfe6e0296cc85fbacb92cae92bb
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fphonchi%2FCryoParticleSegment
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fphonchi%2FCryoParticleSegment
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=phonchi%2FCryoParticleSegment
Reloadhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
Reloadhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
Reloadhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
phonchi https://patch-diff.githubusercontent.com/phonchi
CryoParticleSegmenthttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
cyanazuki/CryoParticleSegmenthttps://patch-diff.githubusercontent.com/cyanazuki/CryoParticleSegment
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fphonchi%2FCryoParticleSegment
Fork 1 https://patch-diff.githubusercontent.com/login?return_to=%2Fphonchi%2FCryoParticleSegment
Star 1 https://patch-diff.githubusercontent.com/login?return_to=%2Fphonchi%2FCryoParticleSegment
GPL-3.0 license https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/LICENSE
1 star https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/stargazers
2 forks https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/forks
Branches https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/branches
Tags https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tags
Activity https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fphonchi%2FCryoParticleSegment
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fphonchi%2FCryoParticleSegment
Code https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
Pull requests 0 https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/pulls
Actions https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/actions
Projects 0 https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/projects
Security 0 https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/security
Insights https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/pulse
Code https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
Pull requests https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/pulls
Actions https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/actions
Projects https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/projects
Security https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/security
Insights https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/pulse
Brancheshttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/branches
Tagshttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tags
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/branches
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tags
46 Commitshttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/commits/main/
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/commits/main/
Modelinghttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tree/main/Modeling
Modelinghttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tree/main/Modeling
notebookhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tree/main/notebook
notebookhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tree/main/notebook
simulationhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tree/main/simulation
simulationhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/tree/main/simulation
LICENSEhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/README.md
setup.pyhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/setup.py
READMEhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
GPL-3.0 licensehttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#crisp
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#features
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#manuscript
Read the Manuscripthttps://arxiv.org/abs/2502.08287
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#table-of-contents
Featureshttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#features
Manuscripthttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#manuscript
Installationhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#installation
Setuphttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#setup
Tutorials and Guideshttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#tutorials-and-guides
Datahttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#data
Licensehttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#license
Creditshttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#credits
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#installation
Google Colabhttps://colab.research.google.com
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#prerequisites
herehttps://www.anaconda.com/download
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#create-a-conda-environment
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#install-dependencies
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#setup
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#supported-components
Supported segmentation modelshttps://smp.readthedocs.io/en/latest/models.html
Supported encodershttps://smp.readthedocs.io/en/latest/encoders.html
Supported Loss functionshttps://smp.readthedocs.io/en/latest/losses.html
Supported Optimizershttps://pytorch.org/docs/stable/optim.html#algorithms
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#tutorials-and-guides
Example Notebookhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/notebook
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#data
simulationhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/blob/main/simulation
CryoPPPhttps://github.com/BioinfoMachineLearning/cryoppp
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#license
GNU General Public License, Version 3https://github.com/phonchi/CryoParticleSegment/blob/master/LICENSE
https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#credits
segmentation_models.pytorchhttps://github.com/qubvel-org/segmentation_models.pytorch
CRF - Conditional Random Fieldshttps://github.com/netw0rkf10w/CRF
PIXERhttps://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2614-y
CASSPERhttps://www.nature.com/articles/s42003-021-01721-1
Readme https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#readme-ov-file
GPL-3.0 license https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment#GPL-3.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment
Activityhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/activity
1 starhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/watchers
1 forkhttps://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fphonchi%2FCryoParticleSegment&report=phonchi+%28user%29
Releases 1https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/releases
v0.1 Latest Aug 27, 2025 https://patch-diff.githubusercontent.com/phonchi/CryoParticleSegment/releases/tag/v0.1
Packages 0https://patch-diff.githubusercontent.com/users/phonchi/packages?repo_name=CryoParticleSegment
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.