René's URL Explorer Experiment


Title: GitHub - npnl/PALS: Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs

Open Graph Title: GitHub - npnl/PALS: Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs

X Title: GitHub - npnl/PALS: Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs

Description: Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs - npnl/PALS

Open Graph Description: Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs ...

X Description: Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs ...

Opengraph URL: https://github.com/npnl/PALS

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:23d5e5fe-9178-d6c9-9041-eaefb5aac3a1
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idEE0A:1DA2:1610681:1E0B4B8:698C5A98
html-safe-nonced22dda8b9a3177fe56a95d04d4c40591b2d512056c55350453cc8d9d07a769fc
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFRTBBOjFEQTI6MTYxMDY4MToxRTBCNEI4OjY5OEM1QTk4IiwidmlzaXRvcl9pZCI6IjI3NjcwNTA2MjIyOTcyMDEzMDQiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac7fef1438f0b5bf7998f475b744e722404f91eb5c081625282c510d76d5645e97
hovercard-subject-tagrepository:127195893
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/npnl/PALS
twitter:imagehttps://opengraph.githubassets.com/3bfe7924ac1b71e61d233dec258b455292f716d72ca5365a0d09b33af345c420/npnl/PALS
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/3bfe7924ac1b71e61d233dec258b455292f716d72ca5365a0d09b33af345c420/npnl/PALS
og:image:altPipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis and ensure quality in stroke research using T1-weighted MRIs ...
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/npnl/PALS git https://github.com/npnl/PALS.git
octolytics-dimension-user_id14880864
octolytics-dimension-user_loginnpnl
octolytics-dimension-repository_id127195893
octolytics-dimension-repository_nwonpnl/PALS
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id127195893
octolytics-dimension-repository_network_root_nwonpnl/PALS
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/npnl/PALS#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fnpnl%2FPALS
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fnpnl%2FPALS
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=npnl%2FPALS
Reloadhttps://patch-diff.githubusercontent.com/npnl/PALS
Reloadhttps://patch-diff.githubusercontent.com/npnl/PALS
Reloadhttps://patch-diff.githubusercontent.com/npnl/PALS
npnl https://patch-diff.githubusercontent.com/npnl
PALShttps://patch-diff.githubusercontent.com/npnl/PALS
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fnpnl%2FPALS
Fork 7 https://patch-diff.githubusercontent.com/login?return_to=%2Fnpnl%2FPALS
Star 25 https://patch-diff.githubusercontent.com/login?return_to=%2Fnpnl%2FPALS
25 stars https://patch-diff.githubusercontent.com/npnl/PALS/stargazers
7 forks https://patch-diff.githubusercontent.com/npnl/PALS/forks
Branches https://patch-diff.githubusercontent.com/npnl/PALS/branches
Tags https://patch-diff.githubusercontent.com/npnl/PALS/tags
Activity https://patch-diff.githubusercontent.com/npnl/PALS/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fnpnl%2FPALS
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fnpnl%2FPALS
Code https://patch-diff.githubusercontent.com/npnl/PALS
Issues 9 https://patch-diff.githubusercontent.com/npnl/PALS/issues
Pull requests 5 https://patch-diff.githubusercontent.com/npnl/PALS/pulls
Actions https://patch-diff.githubusercontent.com/npnl/PALS/actions
Projects 0 https://patch-diff.githubusercontent.com/npnl/PALS/projects
Security 0 https://patch-diff.githubusercontent.com/npnl/PALS/security
Insights https://patch-diff.githubusercontent.com/npnl/PALS/pulse
Code https://patch-diff.githubusercontent.com/npnl/PALS
Issues https://patch-diff.githubusercontent.com/npnl/PALS/issues
Pull requests https://patch-diff.githubusercontent.com/npnl/PALS/pulls
Actions https://patch-diff.githubusercontent.com/npnl/PALS/actions
Projects https://patch-diff.githubusercontent.com/npnl/PALS/projects
Security https://patch-diff.githubusercontent.com/npnl/PALS/security
Insights https://patch-diff.githubusercontent.com/npnl/PALS/pulse
Brancheshttps://patch-diff.githubusercontent.com/npnl/PALS/branches
Tagshttps://patch-diff.githubusercontent.com/npnl/PALS/tags
https://patch-diff.githubusercontent.com/npnl/PALS/branches
https://patch-diff.githubusercontent.com/npnl/PALS/tags
466 Commitshttps://patch-diff.githubusercontent.com/npnl/PALS/commits/main/
https://patch-diff.githubusercontent.com/npnl/PALS/commits/main/
ROIshttps://patch-diff.githubusercontent.com/npnl/PALS/tree/main/ROIs
ROIshttps://patch-diff.githubusercontent.com/npnl/PALS/tree/main/ROIs
templateshttps://patch-diff.githubusercontent.com/npnl/PALS/tree/main/templates
templateshttps://patch-diff.githubusercontent.com/npnl/PALS/tree/main/templates
.dockerignorehttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/.dockerignore
.dockerignorehttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/.dockerignore
.gitignorehttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/.gitignore
README.mdhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/README.md
config.jsonhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/config.json
config.jsonhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/config.json
presets.jsonhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/presets.json
presets.jsonhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/presets.json
qc_tools.pyhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/qc_tools.py
qc_tools.pyhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/qc_tools.py
requirements.txthttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/requirements.txt
requirements.txthttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/requirements.txt
run_pals.pyhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/run_pals.py
run_pals.pyhttps://patch-diff.githubusercontent.com/npnl/PALS/blob/main/run_pals.py
READMEhttps://patch-diff.githubusercontent.com/npnl/PALS
https://patch-diff.githubusercontent.com/npnl/PALS#pipeline-for-analyzing-lesions-after-stroke-pals
https://patch-diff.githubusercontent.com/npnl/PALS#contents
What is PALS?https://patch-diff.githubusercontent.com/npnl/PALS#intro
Pipeline Overviewhttps://patch-diff.githubusercontent.com/npnl/PALS#pipeline-overview
Installationhttps://patch-diff.githubusercontent.com/npnl/PALS#installation
Dependencieshttps://patch-diff.githubusercontent.com/npnl/PALS#dependencies
PALS Installationhttps://patch-diff.githubusercontent.com/npnl/PALS#pals-installation
Expected Data Structurehttps://patch-diff.githubusercontent.com/npnl/PALS#datastructure
Usagehttps://patch-diff.githubusercontent.com/npnl/PALS#usage
Before First Usehttps://patch-diff.githubusercontent.com/npnl/PALS#before-first-use
Running Using Command Line Inputshttps://patch-diff.githubusercontent.com/npnl/PALS#cli-inputs
Running Using Configuration Filehttps://patch-diff.githubusercontent.com/npnl/PALS#config-inputs
Running Multiple Configurations Fileshttps://patch-diff.githubusercontent.com/npnl/PALS#multiple-configs
Configuration Optionshttps://patch-diff.githubusercontent.com/npnl/PALS#config
Outputshttps://patch-diff.githubusercontent.com/npnl/PALS#outputs
Quality Checking Datahttps://patch-diff.githubusercontent.com/npnl/PALS#qc
Planned Developmentshttps://patch-diff.githubusercontent.com/npnl/PALS#planned-developments
Citing PALShttps://patch-diff.githubusercontent.com/npnl/PALS#citation
https://patch-diff.githubusercontent.com/npnl/PALS#what-is-pals
Frontier in Neuroinformaticshttps://www.frontiersin.org/articles/10.3389/fninf.2018.00063/full
https://patch-diff.githubusercontent.com/npnl/PALS#pipeline-overview
https://patch-diff.githubusercontent.com/npnl/PALS#installation
https://patch-diff.githubusercontent.com/npnl/PALS#dependencies
ANTshttps://github.com/ANTsX/ANTs
FSLhttps://fsl.fmrib.ox.ac.uk/fsl/fslwiki
install Pythonhttps://www.python.org/downloads
Virtualenvhttps://packaging.python.org/en/latest/guides/installing-using-pip-and-virtual-environments/
https://patch-diff.githubusercontent.com/npnl/PALS#pals-installation
https://patch-diff.githubusercontent.com/npnl/PALS#expected-data-structure
BIDS-compatiblehttps://bids-specification.readthedocs.io/en/stable/
https://patch-diff.githubusercontent.com/npnl/PALS#usage
https://patch-diff.githubusercontent.com/npnl/PALS#before-first-use
https://patch-diff.githubusercontent.com/npnl/PALS#running-using-command-line-inputs
PALS virtual environmenthttps://patch-diff.githubusercontent.com/npnl/PALS#venv
outputs sectionhttps://patch-diff.githubusercontent.com/npnl/PALS#outputs
https://patch-diff.githubusercontent.com/npnl/PALS#running-using-configuration-file
config sectionhttps://patch-diff.githubusercontent.com/npnl/PALS#config
PALS virtual environmenthttps://patch-diff.githubusercontent.com/npnl/PALS#venv
outputs sectionhttps://patch-diff.githubusercontent.com/npnl/PALS#outputs
https://patch-diff.githubusercontent.com/npnl/PALS#running-multiple-configuration-files
https://patch-diff.githubusercontent.com/npnl/PALS#configuration-options
output sectionhttps://patch-diff.githubusercontent.com/npnl/PALS#output
Before First Usehttps://patch-diff.githubusercontent.com/npnl/PALS#before-first-use
Before First Usehttps://patch-diff.githubusercontent.com/npnl/PALS#before-first-use
Before First Usehttps://patch-diff.githubusercontent.com/npnl/PALS#before-first-use
Before First Usehttps://patch-diff.githubusercontent.com/npnl/PALS#before-first-use
FLIRT User Guidehttps://web.mit.edu/fsl_v5.0.10/fsl/doc/wiki/FLIRT(2f)UserGuide.html
BET User Guidehttps://web.mit.edu/fsl_v5.0.10/fsl/doc/wiki/BET(2f)UserGuide.html
https://patch-diff.githubusercontent.com/npnl/PALS#outputs
QC sectionhttps://patch-diff.githubusercontent.com/npnl/PALS#qc
https://patch-diff.githubusercontent.com/npnl/PALS#quality-checking-data
https://patch-diff.githubusercontent.com/npnl/PALS#planned-developments
QChttps://patch-diff.githubusercontent.com/npnl/PALS#qc
https://patch-diff.githubusercontent.com/npnl/PALS#citing-pals
Frontier in Neuroinformaticshttps://www.frontiersin.org/articles/10.3389/fninf.2018.00063/full
anatomical-mri https://patch-diff.githubusercontent.com/topics/anatomical-mri
brain-extraction https://patch-diff.githubusercontent.com/topics/brain-extraction
freesurfer https://patch-diff.githubusercontent.com/topics/freesurfer
lesion-correction https://patch-diff.githubusercontent.com/topics/lesion-correction
white-matter-segmentation https://patch-diff.githubusercontent.com/topics/white-matter-segmentation
Readme https://patch-diff.githubusercontent.com/npnl/PALS#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/npnl/PALS
Activityhttps://patch-diff.githubusercontent.com/npnl/PALS/activity
Custom propertieshttps://patch-diff.githubusercontent.com/npnl/PALS/custom-properties
25 starshttps://patch-diff.githubusercontent.com/npnl/PALS/stargazers
4 watchinghttps://patch-diff.githubusercontent.com/npnl/PALS/watchers
7 forkshttps://patch-diff.githubusercontent.com/npnl/PALS/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fnpnl%2FPALS&report=npnl+%28user%29
Releases 2https://patch-diff.githubusercontent.com/npnl/PALS/releases
Adds Docker Support Latest Mar 20, 2019 https://patch-diff.githubusercontent.com/npnl/PALS/releases/tag/v1.1.0
+ 1 releasehttps://patch-diff.githubusercontent.com/npnl/PALS/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/npnl/packages?repo_name=PALS
Please reload this pagehttps://patch-diff.githubusercontent.com/npnl/PALS
Contributors 10https://patch-diff.githubusercontent.com/npnl/PALS/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/npnl/PALS
Python 100.0% https://patch-diff.githubusercontent.com/npnl/PALS/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.