René's URL Explorer Experiment


Title: GitHub - nipy/mindboggle: Automated anatomical brain label/shape analysis software (+ website)

Open Graph Title: GitHub - nipy/mindboggle: Automated anatomical brain label/shape analysis software (+ website)

X Title: GitHub - nipy/mindboggle: Automated anatomical brain label/shape analysis software (+ website)

Description: Automated anatomical brain label/shape analysis software (+ website) - nipy/mindboggle

Open Graph Description: Automated anatomical brain label/shape analysis software (+ website) - nipy/mindboggle

X Description: Automated anatomical brain label/shape analysis software (+ website) - nipy/mindboggle

Opengraph URL: https://github.com/nipy/mindboggle

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:c4a921f0-b416-3f5a-9ca8-50148e6293c9
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idA134:335286:173433A:1F4DFCA:698C4AAF
html-safe-nonce1f063ed5ff35ae0ed0dd4bd31a4d9cba97c67daaedea4591be721648604d4dfe
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBMTM0OjMzNTI4NjoxNzM0MzNBOjFGNERGQ0E6Njk4QzRBQUYiLCJ2aXNpdG9yX2lkIjoiNTY5NjY1NDA3Njk2MTExNDc5OSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmacced721b6f4bd948c099603f847393f9d60e207b7b97f18ea5f7041d959ed1b29
hovercard-subject-tagrepository:593885
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/nipy/mindboggle
twitter:imagehttps://opengraph.githubassets.com/2e727fecaba19bc0ae22bafdbe02a528164127b3ab3ecf7a2eae8cc81de3353e/nipy/mindboggle
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/2e727fecaba19bc0ae22bafdbe02a528164127b3ab3ecf7a2eae8cc81de3353e/nipy/mindboggle
og:image:altAutomated anatomical brain label/shape analysis software (+ website) - nipy/mindboggle
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/nipy/mindboggle git https://github.com/nipy/mindboggle.git
octolytics-dimension-user_id233707
octolytics-dimension-user_loginnipy
octolytics-dimension-repository_id593885
octolytics-dimension-repository_nwonipy/mindboggle
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id593885
octolytics-dimension-repository_network_root_nwonipy/mindboggle
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/nipy/mindboggle#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fnipy%2Fmindboggle
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fnipy%2Fmindboggle
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=nipy%2Fmindboggle
Reloadhttps://patch-diff.githubusercontent.com/nipy/mindboggle
Reloadhttps://patch-diff.githubusercontent.com/nipy/mindboggle
Reloadhttps://patch-diff.githubusercontent.com/nipy/mindboggle
nipy https://patch-diff.githubusercontent.com/nipy
mindbogglehttps://patch-diff.githubusercontent.com/nipy/mindboggle
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fnipy%2Fmindboggle
Fork 53 https://patch-diff.githubusercontent.com/login?return_to=%2Fnipy%2Fmindboggle
Star 154 https://patch-diff.githubusercontent.com/login?return_to=%2Fnipy%2Fmindboggle
mindboggle.infohttp://mindboggle.info
View license https://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/LICENSE.rst
154 stars https://patch-diff.githubusercontent.com/nipy/mindboggle/stargazers
53 forks https://patch-diff.githubusercontent.com/nipy/mindboggle/forks
Branches https://patch-diff.githubusercontent.com/nipy/mindboggle/branches
Tags https://patch-diff.githubusercontent.com/nipy/mindboggle/tags
Activity https://patch-diff.githubusercontent.com/nipy/mindboggle/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fnipy%2Fmindboggle
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fnipy%2Fmindboggle
Code https://patch-diff.githubusercontent.com/nipy/mindboggle
Issues 21 https://patch-diff.githubusercontent.com/nipy/mindboggle/issues
Pull requests 1 https://patch-diff.githubusercontent.com/nipy/mindboggle/pulls
Actions https://patch-diff.githubusercontent.com/nipy/mindboggle/actions
Projects 0 https://patch-diff.githubusercontent.com/nipy/mindboggle/projects
Wiki https://patch-diff.githubusercontent.com/nipy/mindboggle/wiki
Security 0 https://patch-diff.githubusercontent.com/nipy/mindboggle/security
Insights https://patch-diff.githubusercontent.com/nipy/mindboggle/pulse
Code https://patch-diff.githubusercontent.com/nipy/mindboggle
Issues https://patch-diff.githubusercontent.com/nipy/mindboggle/issues
Pull requests https://patch-diff.githubusercontent.com/nipy/mindboggle/pulls
Actions https://patch-diff.githubusercontent.com/nipy/mindboggle/actions
Projects https://patch-diff.githubusercontent.com/nipy/mindboggle/projects
Wiki https://patch-diff.githubusercontent.com/nipy/mindboggle/wiki
Security https://patch-diff.githubusercontent.com/nipy/mindboggle/security
Insights https://patch-diff.githubusercontent.com/nipy/mindboggle/pulse
Brancheshttps://patch-diff.githubusercontent.com/nipy/mindboggle/branches
Tagshttps://patch-diff.githubusercontent.com/nipy/mindboggle/tags
https://patch-diff.githubusercontent.com/nipy/mindboggle/branches
https://patch-diff.githubusercontent.com/nipy/mindboggle/tags
3,266 Commitshttps://patch-diff.githubusercontent.com/nipy/mindboggle/commits/master/
https://patch-diff.githubusercontent.com/nipy/mindboggle/commits/master/
.circlecihttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/.circleci
.circlecihttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/.circleci
colormaphttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/colormap
colormaphttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/colormap
colors_scripthttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/colors_script
colors_scripthttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/colors_script
docshttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/docs
docshttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/docs
installhttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/install
installhttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/install
mindbogglehttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/mindboggle
mindbogglehttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/mindboggle
termshttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/terms
termshttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/terms
vtk_cpp_toolshttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/vtk_cpp_tools
vtk_cpp_toolshttps://patch-diff.githubusercontent.com/nipy/mindboggle/tree/master/vtk_cpp_tools
.gitignorehttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/.gitignore
CHANGELOGhttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/CHANGELOG
CHANGELOGhttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/CHANGELOG
LICENSE.rsthttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/LICENSE.rst
LICENSE.rsthttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/LICENSE.rst
README.rsthttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/README.rst
README.rsthttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/README.rst
THANKS.rsthttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/THANKS.rst
THANKS.rsthttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/THANKS.rst
info.pyhttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/info.py
info.pyhttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/info.py
setup.pyhttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/nipy/mindboggle/blob/master/setup.py
READMEhttps://patch-diff.githubusercontent.com/nipy/mindboggle
Licensehttps://patch-diff.githubusercontent.com/nipy/mindboggle
https://patch-diff.githubusercontent.com/nipy/mindboggle#software
Nipypehttp://nipy.org/nipype
|version|https://patch-diff.githubusercontent.com/nipy/mindboggle#id18
|today|https://patch-diff.githubusercontent.com/nipy/mindboggle#id20
:ref:`modindex`https://patch-diff.githubusercontent.com/nipy/mindboggle#id1
:ref:`genindex`https://patch-diff.githubusercontent.com/nipy/mindboggle#id3
https://patch-diff.githubusercontent.com/nipy/mindboggle#contents
Linkshttps://patch-diff.githubusercontent.com/nipy/mindboggle#links
Referencehttps://patch-diff.githubusercontent.com/nipy/mindboggle#reference
Helphttps://patch-diff.githubusercontent.com/nipy/mindboggle#help
Installationhttps://patch-diff.githubusercontent.com/nipy/mindboggle#installation
Tutorialhttps://patch-diff.githubusercontent.com/nipy/mindboggle#tutorial
Run one commandhttps://patch-diff.githubusercontent.com/nipy/mindboggle#run-one-command
Run separate commandshttps://patch-diff.githubusercontent.com/nipy/mindboggle#run-separate-commands
Visualize outputhttps://patch-diff.githubusercontent.com/nipy/mindboggle#visualize-output
Appendix: processinghttps://patch-diff.githubusercontent.com/nipy/mindboggle#appendix-processing
Appendix: outputhttps://patch-diff.githubusercontent.com/nipy/mindboggle#appendix-output
https://patch-diff.githubusercontent.com/nipy/mindboggle#links
FAQhttp://mindboggle.readthedocs.io/en/latest/faq.html
GitHubhttp://github.com/nipy/mindboggle
Circleci testshttps://circleci.com/gh/nipy/mindboggle
Contributorshttp://mindboggle.info/people.html
Licensehttp://mindboggle.readthedocs.io/en/latest/license.html
https://patch-diff.githubusercontent.com/nipy/mindboggle#reference
doi:10.1371/journal.pcbi.1005350https://doi.org/10.1371/journal.pcbi.1005350
https://patch-diff.githubusercontent.com/nipy/mindboggle#help
NeuroStarshttps://neurostars.org/tags/mindboggle/
submit an issuehttps://github.com/nipy/mindboggle/issues
https://patch-diff.githubusercontent.com/nipy/mindboggle#installation
create a Singularity imagehttp://mindboggle.readthedocs.io/en/latest/faq/singularity.html
Install and run Dockerhttps://docs.docker.com/engine/installation/
Mac is set to use 2 GB runtime memoryhttps://docs.docker.com/docker-for-mac/
mindboggle_input_example.ziphttps://osf.io/3xfb8/?action=download&version=1
example_mri_data.ziphttps://osf.io/k3m94/?action=download&version=1
https://patch-diff.githubusercontent.com/nipy/mindboggle#tutorial
https://patch-diff.githubusercontent.com/nipy/mindboggle#run-one-command
https://patch-diff.githubusercontent.com/nipy/mindboggle#run-separate-commands
FreeSurferhttp://surfer.nmr.mgh.harvard.edu
ANTshttp://stnava.github.io/ANTs/
OASIS-30_Atropos_templatehttps://osf.io/rh9km/
mindboggle_input_examplehttps://osf.io/3xfb8/?action=download&version=1
https://patch-diff.githubusercontent.com/nipy/mindboggle#visualize-output
Paraviewhttps://www.paraview.org/2
https://patch-diff.githubusercontent.com/nipy/mindboggle#appendix-processing
combine_2labels_in_2volumeshttps://github.com/nipy/mindboggle/blob/master/mindboggle/guts/segment.py#L1660
volume_per_brain_regionhttps://github.com/nipy/mindboggle/blob/master/mindboggle/shapes/volume_shapes.py#L14
surface areahttps://github.com/nipy/mindboggle/blob/master/vtk_cpp_tools/PointAreaComputer.cpp
travel depthhttps://github.com/nipy/mindboggle/blob/master/vtk_cpp_tools/TravelDepth.cpp
geodesic depthhttps://github.com/nipy/mindboggle/blob/master/vtk_cpp_tools/geodesic_depth/GeodesicDepthMain.cpp
mean curvaturehttps://github.com/nipy/mindboggle/blob/master/vtk_cpp_tools/curvature/CurvatureMain.cpp
foldshttps://github.com/nipy/mindboggle/blob/master/mindboggle/features/folds.py
sulcihttps://github.com/nipy/mindboggle/blob/master/mindboggle/features/sulci.py
fundihttps://github.com/nipy/mindboggle/blob/master/mindboggle/features/fundi.py
areahttps://github.com/nipy/mindboggle/blob/master/vtk_cpp_tools/area/PointAreaMain.cpp
means_per_labelhttps://github.com/nipy/mindboggle/blob/master/mindboggle/guts/compute.py#L512
Laplace-Beltrami spectrumhttps://github.com/nipy/mindboggle/blob/master/mindboggle/shapes/laplace_beltrami.py
Zernike momentshttps://github.com/nipy/mindboggle/blob/master/mindboggle/shapes/zernike/zernike.py
compute.pyhttps://github.com/nipy/mindboggle/blob/master/mindboggle/guts/compute.py#L716
https://patch-diff.githubusercontent.com/nipy/mindboggle#appendix-output
exampleshttps://osf.io/8cf5z
NIfTIhttp://nifti.nimh.nih.gov
VTKhttp://www.vtk.org/
:doc:`labels `https://patch-diff.githubusercontent.com/nipy/mindboggle#id15
DKThttp://mindboggle.info/data.html
DKThttp://mindboggle.info/data.html
mindboggle.infohttp://mindboggle.info
python https://patch-diff.githubusercontent.com/topics/python
image-processing https://patch-diff.githubusercontent.com/topics/image-processing
python3 https://patch-diff.githubusercontent.com/topics/python3
image-analysis https://patch-diff.githubusercontent.com/topics/image-analysis
surfaces https://patch-diff.githubusercontent.com/topics/surfaces
shape-descriptor https://patch-diff.githubusercontent.com/topics/shape-descriptor
brain-imaging https://patch-diff.githubusercontent.com/topics/brain-imaging
mesh-processing https://patch-diff.githubusercontent.com/topics/mesh-processing
shape-analysis https://patch-diff.githubusercontent.com/topics/shape-analysis
Readme https://patch-diff.githubusercontent.com/nipy/mindboggle#readme-ov-file
View license https://patch-diff.githubusercontent.com/nipy/mindboggle#License-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/nipy/mindboggle
Activityhttps://patch-diff.githubusercontent.com/nipy/mindboggle/activity
Custom propertieshttps://patch-diff.githubusercontent.com/nipy/mindboggle/custom-properties
154 starshttps://patch-diff.githubusercontent.com/nipy/mindboggle/stargazers
18 watchinghttps://patch-diff.githubusercontent.com/nipy/mindboggle/watchers
53 forkshttps://patch-diff.githubusercontent.com/nipy/mindboggle/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fnipy%2Fmindboggle&report=nipy+%28user%29
Releases 10https://patch-diff.githubusercontent.com/nipy/mindboggle/releases
Mindboggle with Docker and Singularity Latest Nov 5, 2019 https://patch-diff.githubusercontent.com/nipy/mindboggle/releases/tag/v1.3.8
+ 9 releaseshttps://patch-diff.githubusercontent.com/nipy/mindboggle/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/nipy/packages?repo_name=mindboggle
Please reload this pagehttps://patch-diff.githubusercontent.com/nipy/mindboggle
Contributors 25https://patch-diff.githubusercontent.com/nipy/mindboggle/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/nipy/mindboggle
+ 11 contributorshttps://patch-diff.githubusercontent.com/nipy/mindboggle/graphs/contributors
Python 87.6% https://patch-diff.githubusercontent.com/nipy/mindboggle/search?l=python
C++ 10.6% https://patch-diff.githubusercontent.com/nipy/mindboggle/search?l=c%2B%2B
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.