René's URL Explorer Experiment


Title: GitHub - mrsast/stringtie: Transcript assembly and quantification for RNA-Seq

Open Graph Title: GitHub - mrsast/stringtie: Transcript assembly and quantification for RNA-Seq

X Title: GitHub - mrsast/stringtie: Transcript assembly and quantification for RNA-Seq

Description: Transcript assembly and quantification for RNA-Seq - mrsast/stringtie

Open Graph Description: Transcript assembly and quantification for RNA-Seq - mrsast/stringtie

X Description: Transcript assembly and quantification for RNA-Seq - mrsast/stringtie

Opengraph URL: https://github.com/mrsast/stringtie

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:b21547b9-e460-66eb-f3ab-3d04285e435a
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idB0BA:5C832:2CE086F:3F4DF20:697913F2
html-safe-nonce3fb9dc26216a57a9ae2a6ea7a39a9c26fe5830026c07a444eef29e2ae0c27239
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCMEJBOjVDODMyOjJDRTA4NkY6M0Y0REYyMDo2OTc5MTNGMiIsInZpc2l0b3JfaWQiOiI4Mjg5NDkxMTYwMjg0MDc0OTk0IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacdabeb8ff18d7fa6665426d2751928af30edd7115a069df03e3b8fee9a77c79f5
hovercard-subject-tagrepository:518204706
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/mrsast/stringtie
twitter:imagehttps://opengraph.githubassets.com/90b84390926d4070838651363034cfeac2000f2e18ee7b87d3dcc2474db62e10/mrsast/stringtie
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/90b84390926d4070838651363034cfeac2000f2e18ee7b87d3dcc2474db62e10/mrsast/stringtie
og:image:altTranscript assembly and quantification for RNA-Seq - mrsast/stringtie
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonedb675ffbe86f3a08023aaf76f083fc7f65e074708cdc617650b84119176f1009
turbo-cache-controlno-preview
go-importgithub.com/mrsast/stringtie git https://github.com/mrsast/stringtie.git
octolytics-dimension-user_id22265241
octolytics-dimension-user_loginmrsast
octolytics-dimension-repository_id518204706
octolytics-dimension-repository_nwomrsast/stringtie
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id25170618
octolytics-dimension-repository_parent_nwogpertea/stringtie
octolytics-dimension-repository_network_root_id25170618
octolytics-dimension-repository_network_root_nwogpertea/stringtie
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3e6c9f597d227b0490794716e8b9dddd21a41ead
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/mrsast/stringtie#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmrsast%2Fstringtie
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fmrsast%2Fstringtie
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=mrsast%2Fstringtie
Reloadhttps://patch-diff.githubusercontent.com/mrsast/stringtie
Reloadhttps://patch-diff.githubusercontent.com/mrsast/stringtie
Reloadhttps://patch-diff.githubusercontent.com/mrsast/stringtie
mrsast https://patch-diff.githubusercontent.com/mrsast
stringtiehttps://patch-diff.githubusercontent.com/mrsast/stringtie
gpertea/stringtiehttps://patch-diff.githubusercontent.com/gpertea/stringtie
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fmrsast%2Fstringtie
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fmrsast%2Fstringtie
Star 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fmrsast%2Fstringtie
MIT license https://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/LICENSE
0 stars https://patch-diff.githubusercontent.com/mrsast/stringtie/stargazers
86 forks https://patch-diff.githubusercontent.com/mrsast/stringtie/forks
Branches https://patch-diff.githubusercontent.com/mrsast/stringtie/branches
Tags https://patch-diff.githubusercontent.com/mrsast/stringtie/tags
Activity https://patch-diff.githubusercontent.com/mrsast/stringtie/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fmrsast%2Fstringtie
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fmrsast%2Fstringtie
Code https://patch-diff.githubusercontent.com/mrsast/stringtie
Pull requests 0 https://patch-diff.githubusercontent.com/mrsast/stringtie/pulls
Actions https://patch-diff.githubusercontent.com/mrsast/stringtie/actions
Projects 0 https://patch-diff.githubusercontent.com/mrsast/stringtie/projects
Security 0 https://patch-diff.githubusercontent.com/mrsast/stringtie/security
Insights https://patch-diff.githubusercontent.com/mrsast/stringtie/pulse
Code https://patch-diff.githubusercontent.com/mrsast/stringtie
Pull requests https://patch-diff.githubusercontent.com/mrsast/stringtie/pulls
Actions https://patch-diff.githubusercontent.com/mrsast/stringtie/actions
Projects https://patch-diff.githubusercontent.com/mrsast/stringtie/projects
Security https://patch-diff.githubusercontent.com/mrsast/stringtie/security
Insights https://patch-diff.githubusercontent.com/mrsast/stringtie/pulse
Brancheshttps://patch-diff.githubusercontent.com/mrsast/stringtie/branches
Tagshttps://patch-diff.githubusercontent.com/mrsast/stringtie/tags
https://patch-diff.githubusercontent.com/mrsast/stringtie/branches
https://patch-diff.githubusercontent.com/mrsast/stringtie/tags
415 Commitshttps://patch-diff.githubusercontent.com/mrsast/stringtie/commits/master/
https://patch-diff.githubusercontent.com/mrsast/stringtie/commits/master/
SuperReads_RNAhttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/SuperReads_RNA
SuperReads_RNAhttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/SuperReads_RNA
gclibhttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/gclib
gclibhttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/gclib
htslibhttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/htslib
htslibhttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/htslib
testshttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/tests
testshttps://patch-diff.githubusercontent.com/mrsast/stringtie/tree/master/tests
LICENSEhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/LICENSE
Makefilehttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/Makefile
Makefilehttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/Makefile
README.mdhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/README.md
TODO.mdhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/TODO.md
TODO.mdhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/TODO.md
prepDE.pyhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prepDE.py
prepDE.pyhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prepDE.py
prepDE.py3https://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prepDE.py3
prepDE.py3https://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prepDE.py3
prep_linux.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prep_linux.sh
prep_linux.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prep_linux.sh
prep_mac.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prep_mac.sh
prep_mac.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prep_mac.sh
prep_source.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prep_source.sh
prep_source.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/prep_source.sh
rlink.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/rlink.cpp
rlink.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/rlink.cpp
rlink.hhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/rlink.h
rlink.hhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/rlink.h
run_tests.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/run_tests.sh
run_tests.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/run_tests.sh
run_tests_valgrind.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/run_tests_valgrind.sh
run_tests_valgrind.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/run_tests_valgrind.sh
stringtie.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/stringtie.cpp
stringtie.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/stringtie.cpp
tablemaker.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tablemaker.cpp
tablemaker.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tablemaker.cpp
tablemaker.hhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tablemaker.h
tablemaker.hhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tablemaker.h
tag_git.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tag_git.sh
tag_git.shhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tag_git.sh
tmerge.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tmerge.cpp
tmerge.cpphttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tmerge.cpp
tmerge.hhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tmerge.h
tmerge.hhttps://patch-diff.githubusercontent.com/mrsast/stringtie/blob/master/tmerge.h
READMEhttps://patch-diff.githubusercontent.com/mrsast/stringtie
Licensehttps://patch-diff.githubusercontent.com/mrsast/stringtie
https://camo.githubusercontent.com/08cef40a9105b6526ca22088bc514fbfdbc9aac1ddbf8d4e6c750e3a88a44dca/68747470733a2f2f696d672e736869656c64732e696f2f62616467652f4c6963656e73652d4d49542d626c75652e737667
https://patch-diff.githubusercontent.com/mrsast/stringtie#stringtie-efficient-transcript-assembly-and-quantitation-of-rna-seq-data
https://ccb.jhu.edu/software/stringtiehttps://ccb.jhu.edu/software/stringtie
https://patch-diff.githubusercontent.com/mrsast/stringtie#obtaining-and-installing-stringtie
Releaseshttps://github.com/gpertea/stringtie/releases
https://patch-diff.githubusercontent.com/mrsast/stringtie#building-the-latest-version-from-the-repository
https://patch-diff.githubusercontent.com/mrsast/stringtie#using-pre-compiled-binary-releases
Releaseshttps://github.com/gpertea/stringtie/releases
super-reads modulehttps://patch-diff.githubusercontent.com/mrsast/stringtie#the-super-reads-module
https://patch-diff.githubusercontent.com/mrsast/stringtie#running-stringtie
https://patch-diff.githubusercontent.com/mrsast/stringtie#running-stringtie-on-the-provided-testdemo-data
test_data.tar.gzhttps://github.com/gpertea/stringtie/raw/test_data/tests.tar.gz
Releaseshttps://github.com/gpertea/stringtie/releases
https://patch-diff.githubusercontent.com/mrsast/stringtie#test-1-input-consists-of-only-alignments-of-short-reads
https://patch-diff.githubusercontent.com/mrsast/stringtie#test-2-input-consists-of-alignments-of-short-reads-and-superreads
https://patch-diff.githubusercontent.com/mrsast/stringtie#test-3-input-consists-of-alignments-of-long-reads
https://patch-diff.githubusercontent.com/mrsast/stringtie#test-4-input-consists-of-alignments-of-long-reads-and-reference-annotation-guides
https://patch-diff.githubusercontent.com/mrsast/stringtie#test-5-input-consists-of-alignments-of-short-reads-and-alignments-of-long-reads-using---mix-option
https://patch-diff.githubusercontent.com/mrsast/stringtie#test-6-input-consists-of-alignments-of-short-reads-alignments-of-long-reads-and-a-reference-annotation-guides
https://patch-diff.githubusercontent.com/mrsast/stringtie#stringtie-options
online manualhttp://ccb.jhu.edu/software/stringtie/index.shtml?t=manual
https://patch-diff.githubusercontent.com/mrsast/stringtie#input-files
https://patch-diff.githubusercontent.com/mrsast/stringtie#reference-transcripts-guides
https://patch-diff.githubusercontent.com/mrsast/stringtie#the-super-reads-module
SuperReads_RNA/README.mdhttps://github.com/gpertea/stringtie/blob/master/SuperReads_RNA/README.md
https://patch-diff.githubusercontent.com/mrsast/stringtie#using-super-reads-with-stringtie
SuperReads_RNAhttps://github.com/gpertea/stringtie/blob/master/SuperReads_RNA/README.md
Running StringTiehttps://patch-diff.githubusercontent.com/mrsast/stringtie#running-stringtie
https://patch-diff.githubusercontent.com/mrsast/stringtie#license
MIT Licensehttps://opensource.org/licenses/MIT
https://patch-diff.githubusercontent.com/mrsast/stringtie#publications
Transcriptome assembly from long-read RNA-seq alignments with StringTie2https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1910-1
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgownhttp://www.nature.com/nprot/journal/v11/n9/full/nprot.2016.095.html
StringTie enables improved reconstruction of a transcriptome from RNA-seq readshttp://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.3122.html
Readme https://patch-diff.githubusercontent.com/mrsast/stringtie#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/mrsast/stringtie#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/mrsast/stringtie
Activityhttps://patch-diff.githubusercontent.com/mrsast/stringtie/activity
0 starshttps://patch-diff.githubusercontent.com/mrsast/stringtie/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/mrsast/stringtie/watchers
0 forkshttps://patch-diff.githubusercontent.com/mrsast/stringtie/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fmrsast%2Fstringtie&report=mrsast+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/mrsast/stringtie/releases
42 tags https://patch-diff.githubusercontent.com/mrsast/stringtie/tags
Packages 0https://patch-diff.githubusercontent.com/users/mrsast/packages?repo_name=stringtie
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.