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Title: GitHub - mkpython3/Mutation-Simulator: A tool for simulating random mutations in any genome

Open Graph Title: GitHub - mkpython3/Mutation-Simulator: A tool for simulating random mutations in any genome

X Title: GitHub - mkpython3/Mutation-Simulator: A tool for simulating random mutations in any genome

Description: A tool for simulating random mutations in any genome - mkpython3/Mutation-Simulator

Open Graph Description: A tool for simulating random mutations in any genome - mkpython3/Mutation-Simulator

X Description: A tool for simulating random mutations in any genome - mkpython3/Mutation-Simulator

Opengraph URL: https://github.com/mkpython3/Mutation-Simulator

X: @github

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