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Title: GitHub - lkytal/PepNet: The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra

Open Graph Title: GitHub - lkytal/PepNet: The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra

X Title: GitHub - lkytal/PepNet: The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra

Description: The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra - lkytal/PepNet

Open Graph Description: The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra - lkytal/PepNet

X Description: The state of the art Deep CNN neural network for de novo sequencing of tandem mass spectra - lkytal/PepNet

Opengraph URL: https://github.com/lkytal/PepNet

X: @github

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Accurate De Novo Peptide Sequencing Using Fully Convolutional Neural Networkshttps://link.springer.com/article/10.1038/s41467-023-43010-x
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https://doi.org/10.5281/zenodo.7869847
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