René's URL Explorer Experiment


Title: GitHub - lindechun/plotTree

Open Graph Title: GitHub - lindechun/plotTree

X Title: GitHub - lindechun/plotTree

Description: Contribute to lindechun/plotTree development by creating an account on GitHub.

Open Graph Description: Contribute to lindechun/plotTree development by creating an account on GitHub.

X Description: Contribute to lindechun/plotTree development by creating an account on GitHub.

Mail addresses
you@server.com

Opengraph URL: https://github.com/lindechun/plotTree

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:fc1a61ec-e164-4ca3-b5f7-fbd4176b19c0
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idB602:1298D8:1C9004D:26951AF:6970266E
html-safe-nonce31659a3d73df3dcac30900ef9764373bdad1c5fb87c482043a6cccd513cca33b
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCNjAyOjEyOThEODoxQzkwMDREOjI2OTUxQUY6Njk3MDI2NkUiLCJ2aXNpdG9yX2lkIjoiNDM2NjExNDc5MjUzMTgzMDM4MiIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac5c00c295e54bca9218d11a958295f4c3bd5e30a1e3306d7fb7a4d717dbe3e13b
hovercard-subject-tagrepository:79520490
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/lindechun/plotTree
twitter:imagehttps://opengraph.githubassets.com/8b55293b8ec8407b96ba100168fb49c0f1756133f901e8ee72c9f9af590c1042/lindechun/plotTree
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/8b55293b8ec8407b96ba100168fb49c0f1756133f901e8ee72c9f9af590c1042/lindechun/plotTree
og:image:altContribute to lindechun/plotTree development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None26d344b5c41e8171f05f1b33de4ed89a222e01250099adfcd988bb0e02fd1cbb
turbo-cache-controlno-preview
go-importgithub.com/lindechun/plotTree git https://github.com/lindechun/plotTree.git
octolytics-dimension-user_id7624833
octolytics-dimension-user_loginlindechun
octolytics-dimension-repository_id79520490
octolytics-dimension-repository_nwolindechun/plotTree
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id33841624
octolytics-dimension-repository_parent_nwokatholt/plotTree
octolytics-dimension-repository_network_root_id33841624
octolytics-dimension-repository_network_root_nwokatholt/plotTree
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release9f0c240136b4f91bdb92e57a88ba5dc425cbdb12
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/lindechun/plotTree#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Flindechun%2FplotTree
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Flindechun%2FplotTree
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=lindechun%2FplotTree
Reloadhttps://patch-diff.githubusercontent.com/lindechun/plotTree
Reloadhttps://patch-diff.githubusercontent.com/lindechun/plotTree
Reloadhttps://patch-diff.githubusercontent.com/lindechun/plotTree
lindechun https://patch-diff.githubusercontent.com/lindechun
plotTreehttps://patch-diff.githubusercontent.com/lindechun/plotTree
katholt/plotTreehttps://patch-diff.githubusercontent.com/katholt/plotTree
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Flindechun%2FplotTree
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Flindechun%2FplotTree
Star 2 https://patch-diff.githubusercontent.com/login?return_to=%2Flindechun%2FplotTree
2 stars https://patch-diff.githubusercontent.com/lindechun/plotTree/stargazers
35 forks https://patch-diff.githubusercontent.com/lindechun/plotTree/forks
Branches https://patch-diff.githubusercontent.com/lindechun/plotTree/branches
Tags https://patch-diff.githubusercontent.com/lindechun/plotTree/tags
Activity https://patch-diff.githubusercontent.com/lindechun/plotTree/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Flindechun%2FplotTree
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Flindechun%2FplotTree
Code https://patch-diff.githubusercontent.com/lindechun/plotTree
Pull requests 0 https://patch-diff.githubusercontent.com/lindechun/plotTree/pulls
Actions https://patch-diff.githubusercontent.com/lindechun/plotTree/actions
Projects 0 https://patch-diff.githubusercontent.com/lindechun/plotTree/projects
Wiki https://patch-diff.githubusercontent.com/lindechun/plotTree/wiki
Security Uh oh! There was an error while loading. Please reload this page. https://patch-diff.githubusercontent.com/lindechun/plotTree/security
Please reload this pagehttps://patch-diff.githubusercontent.com/lindechun/plotTree
Insights https://patch-diff.githubusercontent.com/lindechun/plotTree/pulse
Code https://patch-diff.githubusercontent.com/lindechun/plotTree
Pull requests https://patch-diff.githubusercontent.com/lindechun/plotTree/pulls
Actions https://patch-diff.githubusercontent.com/lindechun/plotTree/actions
Projects https://patch-diff.githubusercontent.com/lindechun/plotTree/projects
Wiki https://patch-diff.githubusercontent.com/lindechun/plotTree/wiki
Security https://patch-diff.githubusercontent.com/lindechun/plotTree/security
Insights https://patch-diff.githubusercontent.com/lindechun/plotTree/pulse
Brancheshttps://patch-diff.githubusercontent.com/lindechun/plotTree/branches
Tagshttps://patch-diff.githubusercontent.com/lindechun/plotTree/tags
https://patch-diff.githubusercontent.com/lindechun/plotTree/branches
https://patch-diff.githubusercontent.com/lindechun/plotTree/tags
43 Commitshttps://patch-diff.githubusercontent.com/lindechun/plotTree/commits/master/
https://patch-diff.githubusercontent.com/lindechun/plotTree/commits/master/
plotTreeShinyhttps://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/plotTreeShiny
plotTreeShinyhttps://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/plotTreeShiny
server_modifiedhttps://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/server_modified
server_modifiedhttps://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/server_modified
shiny_practicehttps://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/shiny_practice
shiny_practicehttps://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/shiny_practice
tree_example_april2015https://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/tree_example_april2015
tree_example_april2015https://patch-diff.githubusercontent.com/lindechun/plotTree/tree/master/tree_example_april2015
README.mdhttps://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/README.md
plotTree.Rhttps://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/plotTree.R
plotTree.Rhttps://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/plotTree.R
plotTree.pyhttps://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/plotTree.py
plotTree.pyhttps://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/plotTree.py
READMEhttps://patch-diff.githubusercontent.com/lindechun/plotTree
https://patch-diff.githubusercontent.com/lindechun/plotTree#plotting-trees-with-data-using-r-and-python
R code - plotTree.Rhttps://patch-diff.githubusercontent.com/lindechun/plotTree#r-code
Python code (using ete2) - plotTree.pyhttps://patch-diff.githubusercontent.com/lindechun/plotTree#python-code
http://holtlab.nethttp://holtlab.net
http://holtlab.nethttp://holtlab.net
https://patch-diff.githubusercontent.com/lindechun/plotTree#r-code
https://patch-diff.githubusercontent.com/lindechun/plotTree#plottreer
https://patch-diff.githubusercontent.com/lindechun/plotTree#overview
https://patch-diff.githubusercontent.com/lindechun/plotTree#tree-plotting-function
https://patch-diff.githubusercontent.com/lindechun/plotTree#optionally-output-to-pdf
https://patch-diff.githubusercontent.com/lindechun/plotTree#spacing-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#tree-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#info-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#heatmap-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#barplot-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#snp-plot-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#block-plot-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#ancestral-trait-reconstruction
https://patch-diff.githubusercontent.com/lindechun/plotTree#outputs
https://patch-diff.githubusercontent.com/lindechun/plotTree#examples
https://patch-diff.githubusercontent.com/lindechun/plotTree#basic-strain-info
https://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/tree_example_april2015/info.png?raw=true
https://patch-diff.githubusercontent.com/lindechun/plotTree#pan-genome-heatmap
https://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/tree_example_april2015/pan.png?raw=true
https://patch-diff.githubusercontent.com/lindechun/plotTree#curated-genes-coloured
https://patch-diff.githubusercontent.com/lindechun/plotTree/blob/master/tree_example_april2015/res_genes.png?raw=true
https://patch-diff.githubusercontent.com/lindechun/plotTree#python-code
https://patch-diff.githubusercontent.com/lindechun/plotTree#plottreepy
http://ete.cgenomics.org/http://ete.cgenomics.org/
http://www.riverbankcomputing.com/software/sip/downloadhttp://www.riverbankcomputing.com/software/sip/download
http://qt.nokia.com/downloads/sdk-mac-os-cpphttp://qt.nokia.com/downloads/sdk-mac-os-cpp
http://pyqt.sourceforge.net/Docs/PyQt4/installation.htmlhttp://pyqt.sourceforge.net/Docs/PyQt4/installation.html
http://ete.cgenomics.org/http://ete.cgenomics.org/
https://patch-diff.githubusercontent.com/lindechun/plotTree#plottreepy---options
https://patch-diff.githubusercontent.com/lindechun/plotTree#required-inputs
https://patch-diff.githubusercontent.com/lindechun/plotTree#labelling-and-colour-options-text-or-categorical-values
https://patch-diff.githubusercontent.com/lindechun/plotTree#i-print-values-directly-as-columns-of-text
https://patch-diff.githubusercontent.com/lindechun/plotTree#ii-colour-the-leaf-nodes
https://patch-diff.githubusercontent.com/lindechun/plotTree#iii-use-colour-blocks-to-represent-column-values
https://patch-diff.githubusercontent.com/lindechun/plotTree#iv-specify-colours-directly-otherwise-expanded-colorbrewer-set1-is-used
https://patch-diff.githubusercontent.com/lindechun/plotTree#data-matrix-options-numerical-data
https://patch-diff.githubusercontent.com/lindechun/plotTree#tree-formatting-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#branch-supports
https://patch-diff.githubusercontent.com/lindechun/plotTree#colour-branches-or-clade-backgrounds-by-value-of-descendant-leaves
https://patch-diff.githubusercontent.com/lindechun/plotTree#plotting-options
https://patch-diff.githubusercontent.com/lindechun/plotTree#plottree-script---examples
Readme https://patch-diff.githubusercontent.com/lindechun/plotTree#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/lindechun/plotTree
Activityhttps://patch-diff.githubusercontent.com/lindechun/plotTree/activity
2 starshttps://patch-diff.githubusercontent.com/lindechun/plotTree/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/lindechun/plotTree/watchers
0 forkshttps://patch-diff.githubusercontent.com/lindechun/plotTree/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Flindechun%2FplotTree&report=lindechun+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/lindechun/plotTree/releases
Packages 0https://patch-diff.githubusercontent.com/users/lindechun/packages?repo_name=plotTree
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.