René's URL Explorer Experiment


Title: GitHub - learningmatter-mit/PoTS: This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures.

Open Graph Title: GitHub - learningmatter-mit/PoTS: This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures.

X Title: GitHub - learningmatter-mit/PoTS: This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures.

Description: This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures. - GitHub - learningmatter-mit/PoTS: This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures.

Open Graph Description: This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures. - GitHub - learningmatter-mit/PoTS: This repository...

X Description: This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures. - GitHub - learningmatter-mit/PoTS: This repository...

Opengraph URL: https://github.com/learningmatter-mit/PoTS

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:a91b441a-8b93-b75f-408a-6bd291de89d5
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id88B0:C71DF:305781F:41053BF:698DC1E5
html-safe-nonce26c4457152c2853df8a783e24aaf1ac6c6b5ba2f76dcf1291b998351ef2f30b7
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4OEIwOkM3MURGOjMwNTc4MUY6NDEwNTNCRjo2OThEQzFFNSIsInZpc2l0b3JfaWQiOiI2NjQ0MzgyMDI0MzUzMDM4ODIxIiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac128ad42f3e8f1e4e027d9883e97643cfc71af62695b6e3175292b8da144d42bd
hovercard-subject-tagrepository:896555149
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/learningmatter-mit/PoTS
twitter:imagehttps://opengraph.githubassets.com/1df7a09595c7466bcfcc62a810cfdf1562b4691330de9253322338fb6fc03381/learningmatter-mit/PoTS
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/1df7a09595c7466bcfcc62a810cfdf1562b4691330de9253322338fb6fc03381/learningmatter-mit/PoTS
og:image:altThis repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures. - GitHub - learningmatter-mit/PoTS: This repository...
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None2457fd9a1b17ca7f38c3c2653895ccb2e0dd04f18f77446a21354e9bc4b7902f
turbo-cache-controlno-preview
go-importgithub.com/learningmatter-mit/PoTS git https://github.com/learningmatter-mit/PoTS.git
octolytics-dimension-user_id54186134
octolytics-dimension-user_loginlearningmatter-mit
octolytics-dimension-repository_id896555149
octolytics-dimension-repository_nwolearningmatter-mit/PoTS
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id896555149
octolytics-dimension-repository_network_root_nwolearningmatter-mit/PoTS
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release878672b82363fd98fbdc5bd0edb68e572c8a8d9b
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Flearningmatter-mit%2FPoTS
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Flearningmatter-mit%2FPoTS
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=learningmatter-mit%2FPoTS
Reloadhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
Reloadhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
Reloadhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
learningmatter-mit https://patch-diff.githubusercontent.com/learningmatter-mit
PoTShttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Flearningmatter-mit%2FPoTS
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Flearningmatter-mit%2FPoTS
Star 4 https://patch-diff.githubusercontent.com/login?return_to=%2Flearningmatter-mit%2FPoTS
MIT license https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/blob/main/LICENSE
4 stars https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/stargazers
0 forks https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/forks
Branches https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/branches
Tags https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tags
Activity https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Flearningmatter-mit%2FPoTS
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Flearningmatter-mit%2FPoTS
Code https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
Issues 0 https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/issues
Pull requests 0 https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/pulls
Actions https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/actions
Projects 0 https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/projects
Security 0 https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/security
Insights https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/pulse
Code https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
Issues https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/issues
Pull requests https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/pulls
Actions https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/actions
Projects https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/projects
Security https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/security
Insights https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/pulse
Brancheshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/branches
Tagshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tags
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/branches
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tags
38 Commitshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/commits/main/
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/commits/main/
exampleshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tree/main/examples
exampleshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tree/main/examples
scriptshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tree/main/scripts
scriptshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tree/main/scripts
utilshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tree/main/utils
utilshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/tree/main/utils
LICENSEhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/blob/main/README.md
READMEhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
MIT licensehttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#link-pots-transition-state-mode-generation-for-solid-catalysts
VOIDhttps://github.com/learningmatter-mit/VOID
cation-anion Monte Carlo algorithmhttps://github.com/learningmatter-mit/VOID/tree/master?tab=readme-ov-file#docking-for-reactivity
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#overview
examples folderhttps://github.com/learningmatter-mit/PoTS/tree/main/examples
scripts/chemistry_composition.pyhttps://github.com/learningmatter-mit/PoTS/tree/main/scripts/chemistry_composition.py
Optional Command-line Argumentshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#optional-arguments
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#installation
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#usage
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#optional-command-line-arguments
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#using-optional-command-line-arguments
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#examples
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#poscar_test
This examplehttps://github.com/learningmatter-mit/PoTS/tree/main/examples/1_POSCAR_test
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#cif_test
Analogous examplehttps://github.com/learningmatter-mit/PoTS/tree/main/examples/2_CIF_test
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#molecular_oxygens_test
this examplehttps://github.com/learningmatter-mit/PoTS/tree/main/examples/3_Molecular_Oxygens_test
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#acid_hydrogens_test
This examplehttps://github.com/learningmatter-mit/PoTS/tree/main/examples/4_Acid_Hydrogens_test
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#molecular_oxygens_acid_hydrogens_test
examplehttps://github.com/learningmatter-mit/PoTS/tree/main/examples/5_Molecular_Oxygens_Acid_Hydrogens_test
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#modes_for_metals
examplehttps://github.com/learningmatter-mit/PoTS/tree/main/examples/6_Modes_for_Metals_test
chemistry_composition.pyhttps://github.com/learningmatter-mit/PoTS/tree/main/scripts/chemistry_composition.py
examples/Modes_for_Metalshttps://github.com/learningmatter-mit/PoTS/tree/main/examples/6_Modes_for_Metals_test
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#cp2k_ase_gulp_lammps_test
This examplehttps://github.com/learningmatter-mit/PoTS/tree/main/examples/7_CP2K_ASE_LAMMPS_GULP_test
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#pipeline-utilities-utils
utils/https://github.com/learningmatter-mit/PoTS/tree/main/utils
utils/README.mdhttps://github.com/learningmatter-mit/PoTS/blob/main/utils/README.md
https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#citing
https://arxiv.org/abs/2504.08986https://arxiv.org/abs/2504.08986
zeolites https://patch-diff.githubusercontent.com/topics/zeolites
catalysis https://patch-diff.githubusercontent.com/topics/catalysis
dimer https://patch-diff.githubusercontent.com/topics/dimer
transitionstate https://patch-diff.githubusercontent.com/topics/transitionstate
Readme https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS
Activityhttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/activity
Custom propertieshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/custom-properties
4 starshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/stargazers
4 watchinghttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/watchers
0 forkshttps://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Flearningmatter-mit%2FPoTS&report=learningmatter-mit+%28user%29
Releases 1https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/releases
PoTS Latest Dec 11, 2025 https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/releases/tag/PoTS
Packages 0https://patch-diff.githubusercontent.com/orgs/learningmatter-mit/packages?repo_name=PoTS
Python 84.9% https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/search?l=python
Shell 15.1% https://patch-diff.githubusercontent.com/learningmatter-mit/PoTS/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.