René's URL Explorer Experiment


Title: GitHub - jkobject/scDataLoader: a dataloader to work with large single cell datasets from lamindb

Open Graph Title: GitHub - jkobject/scDataLoader: a dataloader to work with large single cell datasets from lamindb

X Title: GitHub - jkobject/scDataLoader: a dataloader to work with large single cell datasets from lamindb

Description: a dataloader to work with large single cell datasets from lamindb - jkobject/scDataLoader

Open Graph Description: a dataloader to work with large single cell datasets from lamindb - jkobject/scDataLoader

X Description: a dataloader to work with large single cell datasets from lamindb - jkobject/scDataLoader

Opengraph URL: https://github.com/jkobject/scDataLoader

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:647bbfc3-c902-e6ce-8110-ff7d7f1b3d60
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8CD2:F6967:50BD07:6B94D7:698CFDEF
html-safe-nonce000a8884b85c747bc6f042f1af99d78f3b6500703d4f3f7f19f83feb0ac62d55
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4Q0QyOkY2OTY3OjUwQkQwNzo2Qjk0RDc6Njk4Q0ZERUYiLCJ2aXNpdG9yX2lkIjoiNDAwNTIzMDQ5MTkwNDgzNTA1NSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac04e926a4d9b36116e542dae181331acba256a6d169c1af0c9260afbdab9b8a3f
hovercard-subject-tagrepository:731248665
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/jkobject/scDataLoader
twitter:imagehttps://repository-images.githubusercontent.com/731248665/7abbf070-c1f0-4400-a245-80d54dbed901
twitter:cardsummary_large_image
og:imagehttps://repository-images.githubusercontent.com/731248665/7abbf070-c1f0-4400-a245-80d54dbed901
og:image:alta dataloader to work with large single cell datasets from lamindb - jkobject/scDataLoader
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonef2da95634bce8a94cfa4123788169bfabdf845fd1d790fbaaaaab09dcfebdf28
turbo-cache-controlno-preview
go-importgithub.com/jkobject/scDataLoader git https://github.com/jkobject/scDataLoader.git
octolytics-dimension-user_id17239533
octolytics-dimension-user_loginjkobject
octolytics-dimension-repository_id731248665
octolytics-dimension-repository_nwojkobject/scDataLoader
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id731248665
octolytics-dimension-repository_network_root_nwojkobject/scDataLoader
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasec21843b18feba17d11efb1895a7db61e8672f2cf
ui-targetcanary-1
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/jkobject/scDataLoader#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fjkobject%2FscDataLoader
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fjkobject%2FscDataLoader
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=jkobject%2FscDataLoader
Reloadhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
Reloadhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
Reloadhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
jkobject https://patch-diff.githubusercontent.com/jkobject
scDataLoaderhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
rochacbruno/python-project-templatehttps://patch-diff.githubusercontent.com/rochacbruno/python-project-template
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fjkobject%2FscDataLoader
Fork 5 https://patch-diff.githubusercontent.com/login?return_to=%2Fjkobject%2FscDataLoader
Star 34 https://patch-diff.githubusercontent.com/login?return_to=%2Fjkobject%2FscDataLoader
www.jkobject.com/scDataLoader/https://www.jkobject.com/scDataLoader/
MIT license https://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/LICENSE
34 stars https://patch-diff.githubusercontent.com/jkobject/scDataLoader/stargazers
5 forks https://patch-diff.githubusercontent.com/jkobject/scDataLoader/forks
Branches https://patch-diff.githubusercontent.com/jkobject/scDataLoader/branches
Tags https://patch-diff.githubusercontent.com/jkobject/scDataLoader/tags
Activity https://patch-diff.githubusercontent.com/jkobject/scDataLoader/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fjkobject%2FscDataLoader
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fjkobject%2FscDataLoader
Code https://patch-diff.githubusercontent.com/jkobject/scDataLoader
Issues 0 https://patch-diff.githubusercontent.com/jkobject/scDataLoader/issues
Pull requests 5 https://patch-diff.githubusercontent.com/jkobject/scDataLoader/pulls
Actions https://patch-diff.githubusercontent.com/jkobject/scDataLoader/actions
Projects 0 https://patch-diff.githubusercontent.com/jkobject/scDataLoader/projects
Security 0 https://patch-diff.githubusercontent.com/jkobject/scDataLoader/security
Insights https://patch-diff.githubusercontent.com/jkobject/scDataLoader/pulse
Code https://patch-diff.githubusercontent.com/jkobject/scDataLoader
Issues https://patch-diff.githubusercontent.com/jkobject/scDataLoader/issues
Pull requests https://patch-diff.githubusercontent.com/jkobject/scDataLoader/pulls
Actions https://patch-diff.githubusercontent.com/jkobject/scDataLoader/actions
Projects https://patch-diff.githubusercontent.com/jkobject/scDataLoader/projects
Security https://patch-diff.githubusercontent.com/jkobject/scDataLoader/security
Insights https://patch-diff.githubusercontent.com/jkobject/scDataLoader/pulse
Brancheshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/branches
Tagshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tags
https://patch-diff.githubusercontent.com/jkobject/scDataLoader/branches
https://patch-diff.githubusercontent.com/jkobject/scDataLoader/tags
400 Commitshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/commits/main/
https://patch-diff.githubusercontent.com/jkobject/scDataLoader/commits/main/
.githubhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/.github
.githubhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/.github
datahttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/data
datahttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/data
docshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/docs
docshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/docs
figureshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/figures
figureshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/figures
notebookshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/notebooks
notebookshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/notebooks
scdataloaderhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/scdataloader
scdataloaderhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/scdataloader
scriptshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/scripts
scriptshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/scripts
testshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/tests
testshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/tree/main/tests
.cursorignorehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/.cursorignore
.cursorignorehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/.cursorignore
.gitignorehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/.gitignore
ABOUT_THIS_TEMPLATE.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/ABOUT_THIS_TEMPLATE.md
ABOUT_THIS_TEMPLATE.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/ABOUT_THIS_TEMPLATE.md
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/CONTRIBUTING.md
CONTRIBUTING.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/CONTRIBUTING.md
Containerfilehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/Containerfile
Containerfilehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/Containerfile
HISTORY.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/HISTORY.md
HISTORY.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/HISTORY.md
LICENSEhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/LICENSE
MANIFEST.inhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/MANIFEST.in
MANIFEST.inhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/MANIFEST.in
Makefilehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/Makefile
Makefilehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/Makefile
README.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/README.md
mkdocs.ymlhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/mkdocs.yml
mkdocs.ymlhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/mkdocs.yml
pyproject.tomlhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/pyproject.toml
pyproject.tomlhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/pyproject.toml
uv.lockhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/uv.lock
uv.lockhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/uv.lock
READMEhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
Contributinghttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
MIT licensehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#scdataloader
https://codecov.io/gh/jkobject/scDataLoader
https://github.com/jkobject/scDataLoader/actions/workflows/main.yml
https://badge.fury.io/py/scDataLoader
https://pepy.tech/project/scDataLoader
https://pepy.tech/project/scDataLoader
https://pepy.tech/project/scDataLoader
https://img.shields.io/github/issues/jkobject/scDataLoader
https://github.com/psf/black
https://doi.org/10.5281/zenodo.10573143
https://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/docs/scdataloader.png
lamindbhttps://lamin.ai/
scanpyhttps://scanpy.readthedocs.io/en/stable/
anndatahttps://anndata.readthedocs.io/en/latest/
https://github.com/Koncopdhttps://github.com/Koncopd
scPRINT paperhttps://doi.org/10.1101/2024.07.29.605556
modelhttps://github.com/cantinilab/scPRINT
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#more
https://patch-diff.githubusercontent.com/jkobject/scDataLoader/blob/main/docs/scdataloader.drawio.png
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#install-it-from-pypi
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#dev-install
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#usage
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#datamodule-usage
docshttps://www.jkobject.com/scDataLoader/
load a datasethttps://www.jkobject.com/scDataLoader/notebooks/1_download_and_preprocess/
create a datasethttps://www.jkobject.com/scDataLoader/notebooks/2_create_dataloader/
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#lightning-free-usage-datasetcollatordataloader
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#gathering-a-pre-training-database
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#getting-all-of-cellxgene
./notebooks/update_lamin_or_cellxgene.ipynbhttps://github.com/jkobject/scdataloader/blob/main/notebooks/update_lamin_or_cellxgene.ipynb
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#getting-the-rest-of-the-scprint-2-corpus
./notebooks/adding_tahoe.ipynbhttps://github.com/jkobject/scdataloader/blob/main/notebooks/adding_tahoe.ipynb
./notebooks/adding_scbasecount.ipynbhttps://github.com/jkobject/scdataloader/blob/main/notebooks/adding_scbasecount.ipynb
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#getting-even-more
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#command-line-usage-to-train-a-moel
scPRINT documentationhttps://www.jkobject.com/scPRINT/
lightning documentationhttps://lightning.ai/docs/pytorch/stable/cli/lightning_cli_intermediate.html
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#faq
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#how-to-update-my-ontologies
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#how-to-load-all-ontologies
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#how-to-move-my-lamin-instance-to-another-folder
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#development
CONTRIBUTING.mdhttps://github.com/jkobject/scdataloader/blob/main/CONTRIBUTING.md
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#license
LICENSEhttps://github.com/jkobject/scdataloader/blob/main/LICENSE
https://patch-diff.githubusercontent.com/jkobject/scDataLoader#acknowledgments
lamin.aihttps://lamin.ai/
scanpyhttps://scanpy.readthedocs.io/en/stable/
anndatahttps://anndata.readthedocs.io/en/latest/
scprinthttps://www.jkobject.com/scPRINT/
www.jkobject.com/scDataLoader/https://www.jkobject.com/scDataLoader/
ml https://patch-diff.githubusercontent.com/topics/ml
pytorch https://patch-diff.githubusercontent.com/topics/pytorch
dataloader https://patch-diff.githubusercontent.com/topics/dataloader
single-cell-rna-seq https://patch-diff.githubusercontent.com/topics/single-cell-rna-seq
lamindb https://patch-diff.githubusercontent.com/topics/lamindb
Readme https://patch-diff.githubusercontent.com/jkobject/scDataLoader#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/jkobject/scDataLoader#MIT-1-ov-file
Contributing https://patch-diff.githubusercontent.com/jkobject/scDataLoader#contributing-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
Activityhttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/activity
34 starshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/stargazers
2 watchinghttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/watchers
5 forkshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fjkobject%2FscDataLoader&report=jkobject+%28user%29
Releases 40https://patch-diff.githubusercontent.com/jkobject/scDataLoader/releases
2.1.1 Latest Feb 10, 2026 https://patch-diff.githubusercontent.com/jkobject/scDataLoader/releases/tag/2.1.1
+ 39 releaseshttps://patch-diff.githubusercontent.com/jkobject/scDataLoader/releases
Packages 0https://patch-diff.githubusercontent.com/users/jkobject/packages?repo_name=scDataLoader
Please reload this pagehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
Contributors 4https://patch-diff.githubusercontent.com/jkobject/scDataLoader/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/jkobject/scDataLoader
Jupyter Notebook 96.9% https://patch-diff.githubusercontent.com/jkobject/scDataLoader/search?l=jupyter-notebook
Python 3.1% https://patch-diff.githubusercontent.com/jkobject/scDataLoader/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.