René's URL Explorer Experiment

Title: GitHub - jermp/sshash: 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.

Open Graph Title: GitHub - jermp/sshash: 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.

X Title: GitHub - jermp/sshash: 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.

Description: 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers. - jermp/sshash

Open Graph Description: 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers. - jermp/sshash

X Description: 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers. - jermp/sshash

Opengraph URL: https://github.com/jermp/sshash

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:8162ce7f-dccf-6613-dced-dd77341eef0c
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	DC58:181A3F:133DCBD:18E08A9:698FE012
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visitor-hmac	9ff56730cd3c70c4772a00907cfd25e1e3e4dba0f83ae88fa50d17a8f9042e7f
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github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/jermp/sshash
twitter:image	https://opengraph.githubassets.com/5b6c92ca24af51c3ec39f3459ed1bd7b9edf0179d934322ed8af59b38fe3b4e2/jermp/sshash
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/5b6c92ca24af51c3ec39f3459ed1bd7b9edf0179d934322ed8af59b38fe3b4e2/jermp/sshash
og:image:alt	📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers. - jermp/sshash
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-control	no-preview
go-import	github.com/jermp/sshash git https://github.com/jermp/sshash.git
octolytics-dimension-user_id	10065674
octolytics-dimension-user_login	jermp
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octolytics-dimension-repository_nwo	jermp/sshash
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	false
octolytics-dimension-repository_network_root_id	447541855
octolytics-dimension-repository_network_root_nwo	jermp/sshash
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
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release	3b33c5aedc9808f45bc5fcf0b1e4404cf749dac7
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://patch-diff.githubusercontent.com/jermp/sshash#start-of-content
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Sign in	https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fjermp%2Fsshash
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub SparkBuild and deploy intelligent apps	https://github.com/features/spark
GitHub ModelsManage and compare prompts	https://github.com/features/models
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
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Changelog	https://github.blog/changelog
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CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
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View all industries	https://github.com/solutions/industry
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Enterprise platformAI-powered developer platform	https://github.com/enterprise
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Premium SupportEnterprise-grade 24/7 support	https://github.com/premium-support
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documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
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Reload	https://patch-diff.githubusercontent.com/jermp/sshash
Reload	https://patch-diff.githubusercontent.com/jermp/sshash
jermp	https://patch-diff.githubusercontent.com/jermp
sshash	https://patch-diff.githubusercontent.com/jermp/sshash
Notifications	https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Fsshash
Fork 18	https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Fsshash
Star 93	https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Fsshash
MIT license	https://patch-diff.githubusercontent.com/jermp/sshash/blob/master/LICENSE
93 stars	https://patch-diff.githubusercontent.com/jermp/sshash/stargazers
18 forks	https://patch-diff.githubusercontent.com/jermp/sshash/forks
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576 Commits	https://patch-diff.githubusercontent.com/jermp/sshash/commits/master/
	https://patch-diff.githubusercontent.com/jermp/sshash/commits/master/
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benchmarks	https://patch-diff.githubusercontent.com/jermp/sshash/tree/master/benchmarks
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CMakeLists.txt	https://patch-diff.githubusercontent.com/jermp/sshash/blob/master/CMakeLists.txt
LICENSE	https://patch-diff.githubusercontent.com/jermp/sshash/blob/master/LICENSE
LICENSE	https://patch-diff.githubusercontent.com/jermp/sshash/blob/master/LICENSE
README.md	https://patch-diff.githubusercontent.com/jermp/sshash/blob/master/README.md
README.md	https://patch-diff.githubusercontent.com/jermp/sshash/blob/master/README.md
README	https://patch-diff.githubusercontent.com/jermp/sshash
MIT license	https://patch-diff.githubusercontent.com/jermp/sshash
	https://github.com/jermp/sshash/actions/workflows/build.yml
	https://github.com/jermp/sshash/actions/workflows/codeql.yml
	https://anaconda.org/bioconda/sshash
	http://bioconda.github.io/recipes/sshash/README.html
	https://doi.org/10.5281/zenodo.7772316
	https://doi.org/10.5281/zenodo.7239205
	https://doi.org/10.5281/zenodo.17582116
here	https://github.com/COMBINE-lab/sshash-rs
Optimizing sparse and skew hashing: faster k-mer dictionaries	https://www.biorxiv.org/content/10.64898/2026.01.21.700884v1
On weighted k-mer dictionaries	https://almob.biomedcentral.com/articles/10.1186/s13015-023-00226-2
Sparse and skew hashing of k-mers	https://doi.org/10.1093/bioinformatics/btac245
SSHash-Lite	https://github.com/jermp/sshash-lite
matchtigs	https://github.com/algbio/matchtigs
	https://patch-diff.githubusercontent.com/jermp/sshash#table-of-contents
Compiling the Code	https://patch-diff.githubusercontent.com/jermp/sshash#compiling-the-code
Dependencies	https://patch-diff.githubusercontent.com/jermp/sshash#dependencies
Tools and Usage	https://patch-diff.githubusercontent.com/jermp/sshash#tools-and-usage
Examples	https://patch-diff.githubusercontent.com/jermp/sshash#Examples
Input Files	https://patch-diff.githubusercontent.com/jermp/sshash#input-files
Create a New Release	https://patch-diff.githubusercontent.com/jermp/sshash#create-a-new-release
Benchmarks	https://patch-diff.githubusercontent.com/jermp/sshash#benchmarks
References	https://patch-diff.githubusercontent.com/jermp/sshash#references
	https://patch-diff.githubusercontent.com/jermp/sshash#compiling-the-code
CMake	https://cmake.org/
	https://patch-diff.githubusercontent.com/jermp/sshash#encoding-of-nucleotides
	https://patch-diff.githubusercontent.com/jermp/sshash#k-mer-length
	https://patch-diff.githubusercontent.com/jermp/sshash#dependencies
PTHash	https://github.com/jermp/pthash
Compiling the Code	https://patch-diff.githubusercontent.com/jermp/sshash#compiling-the-code
	https://patch-diff.githubusercontent.com/jermp/sshash#tools-and-usage
	https://patch-diff.githubusercontent.com/jermp/sshash#examples
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	https://patch-diff.githubusercontent.com/jermp/sshash#example-1
	https://patch-diff.githubusercontent.com/jermp/sshash#example-2
	https://patch-diff.githubusercontent.com/jermp/sshash#example-3
	https://patch-diff.githubusercontent.com/jermp/sshash#example-4
	https://patch-diff.githubusercontent.com/jermp/sshash#input-files
GGCAT	https://github.com/algbio/ggcat
	https://patch-diff.githubusercontent.com/jermp/sshash#datasets
this release	https://github.com/jermp/sshash/releases/tag/v3.0.0
https://doi.org/10.5281/zenodo.7772316	https://doi.org/10.5281/zenodo.7772316
this other repository	https://github.com/jermp/kmer_sets_benchmark
https://zenodo.org/records/17582116	https://zenodo.org/records/17582116
	https://patch-diff.githubusercontent.com/jermp/sshash#weights
BCALM2	https://github.com/GATB/bcalm
UST	https://github.com/jermp/UST
	https://patch-diff.githubusercontent.com/jermp/sshash#create-a-new-release
	https://patch-diff.githubusercontent.com/jermp/sshash#benchmarks
benchmarks	https://patch-diff.githubusercontent.com/jermp/sshash/blob/master/benchmarks
	https://patch-diff.githubusercontent.com/jermp/sshash#references
Optimizing sparse and skew hashing: faster k-mer dictionaries	https://www.biorxiv.org/content/10.64898/2026.01.21.700884v1
On weighted k-mer dictionaries	https://almob.biomedcentral.com/articles/10.1186/s13015-023-00226-2
On weighted k-mer dictionaries	https://drops.dagstuhl.de/opus/volltexte/2022/17043/
Sparse and skew hashing of k-mers	https://doi.org/10.1093/bioinformatics/btac245
Matchtigs: minimum plain text representation of k-mer sets	https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-02968-z
hashing	https://patch-diff.githubusercontent.com/topics/hashing
bioinformatics	https://patch-diff.githubusercontent.com/topics/bioinformatics
dictionary	https://patch-diff.githubusercontent.com/topics/dictionary
k-mer	https://patch-diff.githubusercontent.com/topics/k-mer
minimal-perfect-hash	https://patch-diff.githubusercontent.com/topics/minimal-perfect-hash
Readme	https://patch-diff.githubusercontent.com/jermp/sshash#readme-ov-file
MIT license	https://patch-diff.githubusercontent.com/jermp/sshash#MIT-1-ov-file
Please reload this page	https://patch-diff.githubusercontent.com/jermp/sshash
Activity	https://patch-diff.githubusercontent.com/jermp/sshash/activity
93 stars	https://patch-diff.githubusercontent.com/jermp/sshash/stargazers
4 watching	https://patch-diff.githubusercontent.com/jermp/sshash/watchers
18 forks	https://patch-diff.githubusercontent.com/jermp/sshash/forks
Report repository	https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fjermp%2Fsshash&report=jermp+%28user%29
Releases 8	https://patch-diff.githubusercontent.com/jermp/sshash/releases
Version 5.0.0 Latest Jan 23, 2026	https://patch-diff.githubusercontent.com/jermp/sshash/releases/tag/v5.0.0
+ 7 releases	https://patch-diff.githubusercontent.com/jermp/sshash/releases
Packages 0	https://patch-diff.githubusercontent.com/users/jermp/packages?repo_name=sshash
Contributors 4	https://patch-diff.githubusercontent.com/jermp/sshash/graphs/contributors
Please reload this page	https://patch-diff.githubusercontent.com/jermp/sshash
C++ 89.5%	https://patch-diff.githubusercontent.com/jermp/sshash/search?l=c%2B%2B
Python 5.3%	https://patch-diff.githubusercontent.com/jermp/sshash/search?l=python
Shell 4.2%	https://patch-diff.githubusercontent.com/jermp/sshash/search?l=shell
CMake 1.0%	https://patch-diff.githubusercontent.com/jermp/sshash/search?l=cmake
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

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