René's URL Explorer Experiment


Title: GitHub - jermp/fulgor: ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.

Open Graph Title: GitHub - jermp/fulgor: ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.

X Title: GitHub - jermp/fulgor: ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.

Description: ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index. - jermp/fulgor

Open Graph Description: ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index. - jermp/fulgor

X Description: ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index. - jermp/fulgor

Opengraph URL: https://github.com/jermp/fulgor

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:a6ea5092-c32f-f51c-df42-029c84ade88d
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idA6C8:1B8BC6:CDDBBF:108599D:69908CA4
html-safe-noncef7fdf013334013317ad3ccdf2cbfb23ec3ff979f29b105957c39c3b90d34ccff
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJBNkM4OjFCOEJDNjpDRERCQkY6MTA4NTk5RDo2OTkwOENBNCIsInZpc2l0b3JfaWQiOiIzNjk2ODA4OTExODU0MTQ0Njc2IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacd5a15e2cefc6e29164fa941715280a4bfa9070f3cb2b94208444e628f78f30b2
hovercard-subject-tagrepository:637158288
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/jermp/fulgor
twitter:imagehttps://opengraph.githubassets.com/d1a48c395f6ed16c6bb8da900208adb212cf0f3267ac2870a066f3d8c74699c0/jermp/fulgor
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/d1a48c395f6ed16c6bb8da900208adb212cf0f3267ac2870a066f3d8c74699c0/jermp/fulgor
og:image:alt⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index. - jermp/fulgor
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/jermp/fulgor git https://github.com/jermp/fulgor.git
octolytics-dimension-user_id10065674
octolytics-dimension-user_loginjermp
octolytics-dimension-repository_id637158288
octolytics-dimension-repository_nwojermp/fulgor
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id637158288
octolytics-dimension-repository_network_root_nwojermp/fulgor
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3b33c5aedc9808f45bc5fcf0b1e4404cf749dac7
ui-targetcanary-1
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/jermp/fulgor#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fjermp%2Ffulgor
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fjermp%2Ffulgor
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=jermp%2Ffulgor
Reloadhttps://patch-diff.githubusercontent.com/jermp/fulgor
Reloadhttps://patch-diff.githubusercontent.com/jermp/fulgor
Reloadhttps://patch-diff.githubusercontent.com/jermp/fulgor
jermp https://patch-diff.githubusercontent.com/jermp
fulgorhttps://patch-diff.githubusercontent.com/jermp/fulgor
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Ffulgor
Fork 15 https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Ffulgor
Star 59 https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Ffulgor
MIT license https://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/LICENSE
59 stars https://patch-diff.githubusercontent.com/jermp/fulgor/stargazers
15 forks https://patch-diff.githubusercontent.com/jermp/fulgor/forks
Branches https://patch-diff.githubusercontent.com/jermp/fulgor/branches
Tags https://patch-diff.githubusercontent.com/jermp/fulgor/tags
Activity https://patch-diff.githubusercontent.com/jermp/fulgor/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Ffulgor
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fjermp%2Ffulgor
Code https://patch-diff.githubusercontent.com/jermp/fulgor
Issues 12 https://patch-diff.githubusercontent.com/jermp/fulgor/issues
Pull requests 2 https://patch-diff.githubusercontent.com/jermp/fulgor/pulls
Discussions https://patch-diff.githubusercontent.com/jermp/fulgor/discussions
Actions https://patch-diff.githubusercontent.com/jermp/fulgor/actions
Projects 0 https://patch-diff.githubusercontent.com/jermp/fulgor/projects
Wiki https://patch-diff.githubusercontent.com/jermp/fulgor/wiki
Security 0 https://patch-diff.githubusercontent.com/jermp/fulgor/security
Insights https://patch-diff.githubusercontent.com/jermp/fulgor/pulse
Code https://patch-diff.githubusercontent.com/jermp/fulgor
Issues https://patch-diff.githubusercontent.com/jermp/fulgor/issues
Pull requests https://patch-diff.githubusercontent.com/jermp/fulgor/pulls
Discussions https://patch-diff.githubusercontent.com/jermp/fulgor/discussions
Actions https://patch-diff.githubusercontent.com/jermp/fulgor/actions
Projects https://patch-diff.githubusercontent.com/jermp/fulgor/projects
Wiki https://patch-diff.githubusercontent.com/jermp/fulgor/wiki
Security https://patch-diff.githubusercontent.com/jermp/fulgor/security
Insights https://patch-diff.githubusercontent.com/jermp/fulgor/pulse
Brancheshttps://patch-diff.githubusercontent.com/jermp/fulgor/branches
Tagshttps://patch-diff.githubusercontent.com/jermp/fulgor/tags
https://patch-diff.githubusercontent.com/jermp/fulgor/branches
https://patch-diff.githubusercontent.com/jermp/fulgor/tags
323 Commitshttps://patch-diff.githubusercontent.com/jermp/fulgor/commits/main/
https://patch-diff.githubusercontent.com/jermp/fulgor/commits/main/
.github/workflowshttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/.github/workflows
.github/workflowshttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/.github/workflows
externalhttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/external
externalhttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/external
hookshttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/hooks
hookshttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/hooks
imghttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/img
imghttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/img
includehttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/include
includehttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/include
srchttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/src
srchttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/src
test_data/salmonella_10https://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/test_data/salmonella_10
test_data/salmonella_10https://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/test_data/salmonella_10
toolshttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/tools
toolshttps://patch-diff.githubusercontent.com/jermp/fulgor/tree/main/tools
.clang-formathttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/.clang-format
.clang-formathttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/.clang-format
.gitignorehttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/.gitignore
.gitmoduleshttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/.gitmodules
.gitmoduleshttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/.gitmodules
CMakeLists.txthttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/CMakeLists.txt
CMakeLists.txthttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/CMakeLists.txt
LICENSEhttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/README.md
READMEhttps://patch-diff.githubusercontent.com/jermp/fulgor
MIT licensehttps://patch-diff.githubusercontent.com/jermp/fulgor
https://github.com/jermp/fulgor/actions/workflows/build.yml
https://github.com/jermp/fulgor/actions/workflows/codeql.yml
SSHashhttps://github.com/jermp/sshash
GGCAThttps://github.com/algbio/GGCAT
Fulgor: A Fast and Compact k-mer Index for Large-Scale Matching and Color Querieshttps://almob.biomedcentral.com/articles/10.1186/s13015-024-00251-9
Meta-colored compacted de Bruijn graphshttps://link.springer.com/chapter/10.1007/978-1-0716-3989-4_9
Where the patterns are: repetition-aware compression for colored de Bruijn graphshttps://www.liebertpub.com/doi/10.1089/cmb.2024.0714
Fast pseudoalignment queries on compressed colored de Bruijn graphshttps://doi.org/10.4230/LIPIcs.WABI.2025.6
https://patch-diff.githubusercontent.com/jermp/fulgor#table-of-contents
Dependencieshttps://patch-diff.githubusercontent.com/jermp/fulgor#dependencies
Compiling the codehttps://patch-diff.githubusercontent.com/jermp/fulgor#compiling-the-code
Tools and usagehttps://patch-diff.githubusercontent.com/jermp/fulgor#tools-and-usage
Quick starthttps://patch-diff.githubusercontent.com/jermp/fulgor#quick-start
Indexing an example Salmonella Enterica pangenomehttps://patch-diff.githubusercontent.com/jermp/fulgor#indexing-an-example-salmonella-enterica-pangenome
Pseudoalignment output formathttps://patch-diff.githubusercontent.com/jermp/fulgor#pseudoalignment-output-format
Kmer conservation output formathttps://patch-diff.githubusercontent.com/jermp/fulgor#kmer-conservation-output-format
https://patch-diff.githubusercontent.com/jermp/fulgor#dependencies
https://patch-diff.githubusercontent.com/jermp/fulgor#ggcat
GGCAThttps://github.com/algbio/GGCAT
herehttps://www.rust-lang.org/tools/install
https://patch-diff.githubusercontent.com/jermp/fulgor#zlib
https://patch-diff.githubusercontent.com/jermp/fulgor#compiling-the-code
CMakehttps://cmake.org/
https://patch-diff.githubusercontent.com/jermp/fulgor#tools-and-usage
https://patch-diff.githubusercontent.com/jermp/fulgor#quick-start
https://patch-diff.githubusercontent.com/jermp/fulgor#indexing-an-example-salmonella-enterica-pangenome
herehttps://zenodo.org/record/1323684
https://patch-diff.githubusercontent.com/jermp/fulgor/blob/main/img/fulgor_index_size.png
https://patch-diff.githubusercontent.com/jermp/fulgor#pseudoalignment-output-format
https://patch-diff.githubusercontent.com/jermp/fulgor#example
https://patch-diff.githubusercontent.com/jermp/fulgor#important-note
https://patch-diff.githubusercontent.com/jermp/fulgor#kmer-conservation-output-format
https://patch-diff.githubusercontent.com/jermp/fulgor#example-1
hashing https://patch-diff.githubusercontent.com/topics/hashing
bioinformatics https://patch-diff.githubusercontent.com/topics/bioinformatics
de-bruijn-graphs https://patch-diff.githubusercontent.com/topics/de-bruijn-graphs
kmers https://patch-diff.githubusercontent.com/topics/kmers
Readme https://patch-diff.githubusercontent.com/jermp/fulgor#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/jermp/fulgor#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/jermp/fulgor
Activityhttps://patch-diff.githubusercontent.com/jermp/fulgor/activity
59 starshttps://patch-diff.githubusercontent.com/jermp/fulgor/stargazers
9 watchinghttps://patch-diff.githubusercontent.com/jermp/fulgor/watchers
15 forkshttps://patch-diff.githubusercontent.com/jermp/fulgor/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fjermp%2Ffulgor&report=jermp+%28user%29
Releases 4https://patch-diff.githubusercontent.com/jermp/fulgor/releases
Version 4.0.0 Latest Jul 14, 2025 https://patch-diff.githubusercontent.com/jermp/fulgor/releases/tag/v4.0.0
+ 3 releaseshttps://patch-diff.githubusercontent.com/jermp/fulgor/releases
Packages 0https://patch-diff.githubusercontent.com/users/jermp/packages?repo_name=fulgor
Please reload this pagehttps://patch-diff.githubusercontent.com/jermp/fulgor
Contributors 7https://patch-diff.githubusercontent.com/jermp/fulgor/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/jermp/fulgor
C++ 99.0% https://patch-diff.githubusercontent.com/jermp/fulgor/search?l=c%2B%2B
CMake 1.0% https://patch-diff.githubusercontent.com/jermp/fulgor/search?l=cmake
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.