René's URL Explorer Experiment


Title: Getting started · itmat/Normalization Wiki · GitHub

Open Graph Title: Getting started

X Title: Getting started

Description: RNA-Seq normalization and quantification pipeline. Contribute to itmat/Normalization development by creating an account on GitHub.

Open Graph Description: RNA-Seq normalization and quantification pipeline. Contribute to itmat/Normalization development by creating an account on GitHub.

X Description: RNA-Seq normalization and quantification pipeline. Contribute to itmat/Normalization development by creating an account on GitHub.

Opengraph URL: https://github.com/itmat/Normalization/wiki/Getting-started

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository/wiki/:id(.:format)
route-controllerwiki
route-actionshow
fetch-noncev2:bf5e37a0-c8ed-fcf4-885a-7cf289cad33b
current-catalog-service-hash27690012a2eb28b75d0bacab0f2c11870266e8db9e019fa71fea812b82397bd6
request-id9F5C:1C83D4:953B64:BF948D:6990C76A
html-safe-nonce63e16a1db36626ceaaf984a82b4686a2a7e5efdb8f078a78f997b83a15e57770
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5RjVDOjFDODNENDo5NTNCNjQ6QkY5NDhEOjY5OTBDNzZBIiwidmlzaXRvcl9pZCI6IjM4ODkzNDA5MDU0ODA1NzA3MzAiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac94cf2b7b0325e78336579c64730a6c95c739b87db941a232edbbfa49d06ae2b3
hovercard-subject-tagrepository:17146838
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///wiki/show
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/itmat/Normalization/wiki/Getting-started
twitter:imagehttps://opengraph.githubassets.com/72e99eeea7d577ee69662b2d308f2529ee12fca0b585da532d104c24e160e522/itmat/Normalization
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/72e99eeea7d577ee69662b2d308f2529ee12fca0b585da532d104c24e160e522/itmat/Normalization
og:image:altRNA-Seq normalization and quantification pipeline. Contribute to itmat/Normalization development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/itmat/Normalization git https://github.com/itmat/Normalization.git
octolytics-dimension-user_id23324
octolytics-dimension-user_loginitmat
octolytics-dimension-repository_id17146838
octolytics-dimension-repository_nwoitmat/Normalization
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id17146838
octolytics-dimension-repository_network_root_nwoitmat/Normalization
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release848bc6032dcc93a9a7301dcc3f379a72ba13b96e
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fitmat%2FNormalization%2Fwiki%2FGetting-started
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fitmat%2FNormalization%2Fwiki%2FGetting-started
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fwiki%2Fshow&source=header-repo&source_repo=itmat%2FNormalization
Reloadhttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started
Reloadhttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started
Reloadhttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started
itmat https://patch-diff.githubusercontent.com/itmat
Normalizationhttps://patch-diff.githubusercontent.com/itmat/Normalization
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fitmat%2FNormalization
Fork 6 https://patch-diff.githubusercontent.com/login?return_to=%2Fitmat%2FNormalization
Star 12 https://patch-diff.githubusercontent.com/login?return_to=%2Fitmat%2FNormalization
Code https://patch-diff.githubusercontent.com/itmat/Normalization
Issues 6 https://patch-diff.githubusercontent.com/itmat/Normalization/issues
Pull requests 0 https://patch-diff.githubusercontent.com/itmat/Normalization/pulls
Actions https://patch-diff.githubusercontent.com/itmat/Normalization/actions
Projects 0 https://patch-diff.githubusercontent.com/itmat/Normalization/projects
Wiki https://patch-diff.githubusercontent.com/itmat/Normalization/wiki
Security 0 https://patch-diff.githubusercontent.com/itmat/Normalization/security
Insights https://patch-diff.githubusercontent.com/itmat/Normalization/pulse
Code https://patch-diff.githubusercontent.com/itmat/Normalization
Issues https://patch-diff.githubusercontent.com/itmat/Normalization/issues
Pull requests https://patch-diff.githubusercontent.com/itmat/Normalization/pulls
Actions https://patch-diff.githubusercontent.com/itmat/Normalization/actions
Projects https://patch-diff.githubusercontent.com/itmat/Normalization/projects
Wiki https://patch-diff.githubusercontent.com/itmat/Normalization/wiki
Security https://patch-diff.githubusercontent.com/itmat/Normalization/security
Insights https://patch-diff.githubusercontent.com/itmat/Normalization/pulse
Jump to bottomhttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#wiki-pages-box
Edit https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started/_edit
New page https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/_new
5 revisionshttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started/_history
Installationhttps://github.com/itmat/Normalization/wiki/Getting-started#1-installation
Installing PORThttps://github.com/itmat/Normalization/wiki/Getting-started#a-installing-port
Installing sam2covhttps://github.com/itmat/Normalization/wiki/Getting-started#b-installing-sam2cov-optional
Input requirementshttps://github.com/itmat/Normalization/wiki/Getting-started#2-input-requirements
Input fileshttps://github.com/itmat/Normalization/wiki/Getting-started#a-input-files
Input directory structurehttps://github.com/itmat/Normalization/wiki/Getting-started#b-input-directory-structure
Configuration filehttps://github.com/itmat/Normalization/wiki/Getting-started#c-configuration-file
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#1-installation
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#a-installing-port
https://github.com/itmat/Normalization/releaseshttps://github.com/itmat/Normalization/releases
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#b-installing-sam2cov-optional
sam2covhttps://github.com/khayer/sam2cov
RUMhttps://github.com/itmat/rum#setting-up-and-running-rum
STARhttps://github.com/alexdobin/STAR#star-25
GSNAPhttp://research-pub.gene.com/gmap/
https://github.com/khayer/sam2covhttps://github.com/khayer/sam2cov#sam2cov
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#c-installing-samtools
http://samtools.sourceforge.net/http://samtools.sourceforge.net/
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#2-input-requirements
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#a-input-files
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#i-raw-sequence-reads
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#ii-alignment-files
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#iii-gene-information-file
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#iv-genome-fafai
samtoolshttp://samtools.sourceforge.net/
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#b-input-directory-structure
https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#c-configuration-file
about_cfg.mdhttps://github.com/itmat/Normalization/blob/master/about_cfg.md
How to run PORThttps://github.com/itmat/Normalization/wiki/How-to-run-PORT
Add a custom footer https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/_new?wiki%5Bname%5D=_Footer
Home https://patch-diff.githubusercontent.com/itmat/Normalization/wiki
Please reload this pagehttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started
Getting started https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started
1. Installationhttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#1-installation
a. Installing PORThttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#a-installing-port
b. Installing sam2cov (optional)https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#b-installing-sam2cov-optional
c. Installing samtoolshttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#c-installing-samtools
2. Input requirementshttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#2-input-requirements
a. Input fileshttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#a-input-files
i. Raw sequence readshttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#i-raw-sequence-reads
ii. Alignment fileshttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#ii-alignment-files
iii. Gene information filehttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#iii-gene-information-file
iv. Genome fa/faihttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#iv-genome-fafai
b. Input directory structurehttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#b-input-directory-structure
c. Configuration filehttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started#c-configuration-file
How to run PORT https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/How-to-run-PORT
Please reload this pagehttps://patch-diff.githubusercontent.com/itmat/Normalization/wiki/Getting-started
Add a custom sidebar https://patch-diff.githubusercontent.com/itmat/Normalization/wiki/_new?wiki%5Bname%5D=_Sidebar
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.