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Title: Update to Python 3.10, fix GitHub workflow and automated tests by martinburchell · Pull Request #99 · intermine/intermine-ws-python · GitHub

Open Graph Title: Update to Python 3.10, fix GitHub workflow and automated tests by martinburchell · Pull Request #99 · intermine/intermine-ws-python

X Title: Update to Python 3.10, fix GitHub workflow and automated tests by martinburchell · Pull Request #99 · intermine/intermine-ws-python

Description: Update to Python 3.10, which is the oldest supported version Update Python packages Update Postgres in CI workflow to 14, which is the oldest supported version Fix the CI scripts so they can be run...

Open Graph Description: Update to Python 3.10, which is the oldest supported version Update Python packages Update Postgres in CI workflow to 14, which is the oldest supported version Fix the CI scripts so they can be run...

X Description: Update to Python 3.10, which is the oldest supported version Update Python packages Update Postgres in CI workflow to 14, which is the oldest supported version Fix the CI scripts so they can be run...

Opengraph URL: https://github.com/intermine/intermine-ws-python/pull/99

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Nov 18, 2025https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99#issue-3638355874
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Use later Postgres in GitHub test workflowhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/04f945df709e16f56ead5c12f101773e0e76fad4
04f945dhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/04f945df709e16f56ead5c12f101773e0e76fad4
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Use Python 3.10 in GitHub workflowhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/aa688439243de87ffa8b44dcb8289d87b9aa164d
aa68843https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/aa688439243de87ffa8b44dcb8289d87b9aa164d
https://patch-diff.githubusercontent.com/martinburchell
Better error handling in worflowhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/8dc7e3c7634ab4045952209cd691607473696dd6
8dc7e3chttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/8dc7e3c7634ab4045952209cd691607473696dd6
https://patch-diff.githubusercontent.com/martinburchell
Install python3-lxml build dependencies in workflowhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/771011cc0b6a616d71a580193e0120e47ce5d335
771011chttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/771011cc0b6a616d71a580193e0120e47ce5d335
https://patch-diff.githubusercontent.com/martinburchell
Try another way to install lxml dependencieshttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/2c3c460c1528abe3beafc17a19901e867640c1ab
2c3c460https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/2c3c460c1528abe3beafc17a19901e867640c1ab
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Use later setuptoolshttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/4746a5c90074b2ca05b4fdd08d89abb88a71fe05
4746a5chttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/4746a5c90074b2ca05b4fdd08d89abb88a71fe05
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python3-dev, not python-devhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/3a538ea4009a2241cb7e684587fb6f64c721ab0f
3a538eahttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/3a538ea4009a2241cb7e684587fb6f64c721ab0f
https://patch-diff.githubusercontent.com/martinburchell
Upgrade all of the python packageshttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/be7285441afbfdc55dfb6988070ccce4ba113708
be72854https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/be7285441afbfdc55dfb6988070ccce4ba113708
https://patch-diff.githubusercontent.com/martinburchell
Fix import errorshttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/f056fc06b62b111a24c1b4d9f8178e8b9d9f04f0
f056fc0https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/f056fc06b62b111a24c1b4d9f8178e8b9d9f04f0
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Less noisy CI outputhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/d48f766aea39eca2f1cd867151b42b2210864d45
d48f766https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/d48f766aea39eca2f1cd867151b42b2210864d45
https://patch-diff.githubusercontent.com/martinburchell
Make Solr initialisation runable locallyhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/3b7a5762ac81cb6a5aebf25395de82da73be2a1d
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Improvements to run workflow locallyhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/5472ff2f740f8c1503ed3af28270911285f00382
5472ff2https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/5472ff2f740f8c1503ed3af28270911285f00382
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Set up Java in workflowhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/98ed65eefe47bf60676ad0dfda1ed89d172e5244
98ed65ehttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/98ed65eefe47bf60676ad0dfda1ed89d172e5244
https://patch-diff.githubusercontent.com/martinburchell
Ignore Intermine directoryhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/ec652e45b2a140d1ec0d293b35f0c7866ca2c23d
ec652e4https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/ec652e45b2a140d1ec0d293b35f0c7866ca2c23d
https://patch-diff.githubusercontent.com/martinburchell
Fix XML comparison testshttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/e054326d2e59153ba35754b5006499da2cbaa21a
e054326https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/e054326d2e59153ba35754b5006499da2cbaa21a
https://patch-diff.githubusercontent.com/martinburchell
Drop test databases in CI workflowhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/72f564334da68242c6b1f6f5da18e26ccfd69e58
72f5643https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/72f564334da68242c6b1f6f5da18e26ccfd69e58
https://patch-diff.githubusercontent.com/martinburchell
Replace removed base64.encodestring()https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/3bfe4fc0e9676383304b3ae6703d4549ef842851
3bfe4fchttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/3bfe4fc0e9676383304b3ae6703d4549ef842851
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Use Postgres 14 in workflow as 13 now EOLhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/0daca8946a7b2183018953f9359193d6bd4bdd02
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https://patch-diff.githubusercontent.com/martinburchell
Possible fix for GitHub workflow failure when fetching Javahttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/84adc9d224d9a349581e962b9cd5fb64487eb04a
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Bump urllib3 to fixhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/377d7734a27ab5bc6e308e81b7bb060cefccec53
CVE-2025-50181https://github.com/advisories/GHSA-pq67-6m6q-mj2v
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Bump requests to fixhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/1f18e95abbea2e2f314e4078264b2ac928f039d9
CVE-2024-47081https://github.com/advisories/GHSA-9hjg-9r4m-mvj7
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martinburchellhttps://patch-diff.githubusercontent.com/martinburchell
Nov 19, 2025 https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99#ref-pullrequest-3643073915
Get the build workflow passing intermine/intermine#2457 https://patch-diff.githubusercontent.com/intermine/intermine/pull/2457
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Use dev branch in CI for nowhttps://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/df146328dbb3175dc4598d13158e64129d1dc2d6
df14632https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99/commits/df146328dbb3175dc4598d13158e64129d1dc2d6
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November 21, 2025 18:19https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99#event-21102917073
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Jan 11, 2026 https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/99#ref-pullrequest-1713390377
allow to run on Python 3.10 #97 https://patch-diff.githubusercontent.com/intermine/intermine-ws-python/pull/97
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