René's URL Explorer Experiment


Title: GitHub - gtms/composition: Supplementary material of the paper "Subtype-Aware Batch Correction Retains Biological Signal of Integrated Breast Cancer Datasets"

Open Graph Title: GitHub - gtms/composition: Supplementary material of the paper "Subtype-Aware Batch Correction Retains Biological Signal of Integrated Breast Cancer Datasets"

X Title: GitHub - gtms/composition: Supplementary material of the paper "Subtype-Aware Batch Correction Retains Biological Signal of Integrated Breast Cancer Datasets"

Description: Supplementary material of the paper "Subtype-Aware Batch Correction Retains Biological Signal of Integrated Breast Cancer Datasets" - gtms/composition

Open Graph Description: Supplementary material of the paper "Subtype-Aware Batch Correction Retains Biological Signal of Integrated Breast Cancer Datasets" - gtms/composition

X Description: Supplementary material of the paper "Subtype-Aware Batch Correction Retains Biological Signal of Integrated Breast Cancer Datasets" - gtms/composition

Mail addresses
gil.tomas@igmm.ed.ac.uk

Opengraph URL: https://github.com/gtms/composition

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:6c1c3c3d-83c0-a508-d0d1-bb1a7c3d7cb9
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idE08C:363CE5:23BC62:2D8E06:698E6D6E
html-safe-noncea32c77088aca4e72d53f9102f49601c01ecb7cd1be3bae3e2fcb9c01ae62b537
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJFMDhDOjM2M0NFNToyM0JDNjI6MkQ4RTA2OjY5OEU2RDZFIiwidmlzaXRvcl9pZCI6IjIxNTUxMjQwMDE0NTM1MzQ1NzQiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac7458db7113e5c9e5b605ba8f83c48f262b3e328fddbedf2de8d84fce1fbfb4c9
hovercard-subject-tagrepository:118135821
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/gtms/composition
twitter:imagehttps://opengraph.githubassets.com/85f6a13fb6dd830124d6d7c0ab75fc8911cd85fe0ea50b3b799646a931dd24b4/gtms/composition
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/85f6a13fb6dd830124d6d7c0ab75fc8911cd85fe0ea50b3b799646a931dd24b4/gtms/composition
og:image:altSupplementary material of the paper "Subtype-Aware Batch Correction Retains Biological Signal of Integrated Breast Cancer Datasets" - gtms/composition
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonef86603f0b4e9df9a462725324a8c84c98fc50866bdb6ae8ff026fabe56a60c57
turbo-cache-controlno-preview
go-importgithub.com/gtms/composition git https://github.com/gtms/composition.git
octolytics-dimension-user_id1262765
octolytics-dimension-user_logingtms
octolytics-dimension-repository_id118135821
octolytics-dimension-repository_nwogtms/composition
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id118135821
octolytics-dimension-repository_network_root_nwogtms/composition
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release7eb8835f5978c5aa7a64336b39e0774a93a9a196
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/gtms/composition#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fgtms%2Fcomposition
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fgtms%2Fcomposition
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=gtms%2Fcomposition
Reloadhttps://patch-diff.githubusercontent.com/gtms/composition
Reloadhttps://patch-diff.githubusercontent.com/gtms/composition
Reloadhttps://patch-diff.githubusercontent.com/gtms/composition
gtms https://patch-diff.githubusercontent.com/gtms
compositionhttps://patch-diff.githubusercontent.com/gtms/composition
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fgtms%2Fcomposition
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fgtms%2Fcomposition
Star 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fgtms%2Fcomposition
0 stars https://patch-diff.githubusercontent.com/gtms/composition/stargazers
0 forks https://patch-diff.githubusercontent.com/gtms/composition/forks
Branches https://patch-diff.githubusercontent.com/gtms/composition/branches
Tags https://patch-diff.githubusercontent.com/gtms/composition/tags
Activity https://patch-diff.githubusercontent.com/gtms/composition/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fgtms%2Fcomposition
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fgtms%2Fcomposition
Code https://patch-diff.githubusercontent.com/gtms/composition
Issues 0 https://patch-diff.githubusercontent.com/gtms/composition/issues
Pull requests 0 https://patch-diff.githubusercontent.com/gtms/composition/pulls
Actions https://patch-diff.githubusercontent.com/gtms/composition/actions
Projects 0 https://patch-diff.githubusercontent.com/gtms/composition/projects
Security 0 https://patch-diff.githubusercontent.com/gtms/composition/security
Insights https://patch-diff.githubusercontent.com/gtms/composition/pulse
Code https://patch-diff.githubusercontent.com/gtms/composition
Issues https://patch-diff.githubusercontent.com/gtms/composition/issues
Pull requests https://patch-diff.githubusercontent.com/gtms/composition/pulls
Actions https://patch-diff.githubusercontent.com/gtms/composition/actions
Projects https://patch-diff.githubusercontent.com/gtms/composition/projects
Security https://patch-diff.githubusercontent.com/gtms/composition/security
Insights https://patch-diff.githubusercontent.com/gtms/composition/pulse
Brancheshttps://patch-diff.githubusercontent.com/gtms/composition/branches
Tagshttps://patch-diff.githubusercontent.com/gtms/composition/tags
https://patch-diff.githubusercontent.com/gtms/composition/branches
https://patch-diff.githubusercontent.com/gtms/composition/tags
17 Commitshttps://patch-diff.githubusercontent.com/gtms/composition/commits/master/
https://patch-diff.githubusercontent.com/gtms/composition/commits/master/
codehttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/code
codehttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/code
libhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/lib
libhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/lib
mdhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/md
mdhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/md
readme_files/figure-gfmhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/readme_files/figure-gfm
readme_files/figure-gfmhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/readme_files/figure-gfm
supplementary_files/figure-gfmhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/supplementary_files/figure-gfm
supplementary_files/figure-gfmhttps://patch-diff.githubusercontent.com/gtms/composition/tree/master/supplementary_files/figure-gfm
.gitignorehttps://patch-diff.githubusercontent.com/gtms/composition/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/gtms/composition/blob/master/.gitignore
.projecthttps://patch-diff.githubusercontent.com/gtms/composition/blob/master/.project
.projecthttps://patch-diff.githubusercontent.com/gtms/composition/blob/master/.project
README.mdhttps://patch-diff.githubusercontent.com/gtms/composition/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/gtms/composition/blob/master/README.md
READMEhttps://patch-diff.githubusercontent.com/gtms/composition
https://patch-diff.githubusercontent.com/gtms/composition#subtype-aware-batch-correction-retains-biological-signal-of-integratedbreast-cancer-datasetssupplementary-methods
https://patch-diff.githubusercontent.com/gtms/composition#1dataset-acquisition
GEOhttps://www.ncbi.nlm.nih.gov/geo/
fRMAhttps://bioconductor.org/packages/release/bioc/html/frma.html
RMAhttps://www.bioconductor.org/packages/release/bioc/html/oligo.html
MAS5https://www.bioconductor.org/packages/release/bioc/html/affy.html
https://patch-diff.githubusercontent.com/gtms/composition#2microarray-dataset-integration
ComBathttps://www.bu.edu/jlab/wp-assets/ComBat/Abstract.html
205225_athttps://genecards.weizmann.ac.il/cgi-bin/geneannot/GA_search.pl?keyword_type=probe_set_id&array=HG-U133&target=genecards&keyword=205225_at
216836_s_athttps://genecards.weizmann.ac.il/cgi-bin/geneannot/GA_search.pl?keyword_type=probe_set_id&array=HG-U133&target=genecards&keyword=216836_s_at
Genefuhttps://bioconductor.org/packages/release/bioc/html/genefu.html
sorlie2003http://www.pnas.org/content/100/14/8418
desmedts2008http://clincancerres.aacrjournals.org/content/14/16/5158?ck=nck
PAM50http://ascopubs.org/doi/abs/10.1200/JCO.2008.18.1370
https://patch-diff.githubusercontent.com/gtms/composition#21distortion-of-molecular-esr1-and-erbb2-measurements
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/er-a-boxplots-1.png
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/er-a-extreme-datasets-by-er-status-1.png
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/er-a-extreme-datasets-by-integration-1.png
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/her2-p2-extreme-datasets-by-her-status-1.png
https://patch-diff.githubusercontent.com/gtms/composition#22single-sample-predictor-agreement
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/pam50-concordance-plot-1.png
https://patch-diff.githubusercontent.com/gtms/composition#23comparison-with-other-methods
Harmanhttps://www.ncbi.nlm.nih.gov/pubmed/27585881
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/er-a-boxplots-other-1.png
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/er-a-extreme-datasets-by-er-status-other-1.png
https://patch-diff.githubusercontent.com/gtms/composition/blob/master/Volumes/igmm/sims-lab/Gil/composition-draft/composition/readme_files/figure-gfm/pam50-concordance-plot-other-1.png
Readme https://patch-diff.githubusercontent.com/gtms/composition#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/gtms/composition
Activityhttps://patch-diff.githubusercontent.com/gtms/composition/activity
0 starshttps://patch-diff.githubusercontent.com/gtms/composition/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/gtms/composition/watchers
0 forkshttps://patch-diff.githubusercontent.com/gtms/composition/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fgtms%2Fcomposition&report=gtms+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/gtms/composition/releases
Packages 0https://patch-diff.githubusercontent.com/users/gtms/packages?repo_name=composition
R 100.0% https://patch-diff.githubusercontent.com/gtms/composition/search?l=r
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.