René's URL Explorer Experiment


Title: GitHub - grenaud/Mutation-Simulator: Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations.

Open Graph Title: GitHub - grenaud/Mutation-Simulator: Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations.

X Title: GitHub - grenaud/Mutation-Simulator: Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations.

Description: Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations. - grenaud/Mutation-Simulator

Open Graph Description: Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations. - grenaud/Mutation-Si...

X Description: Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations. - grenaud/Mutation-Si...

Opengraph URL: https://github.com/grenaud/Mutation-Simulator

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:e04a1617-eb96-5f92-18e6-cf9733a37cb9
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idB29C:4ECA9:6A128:8DE4B:698E11A9
html-safe-nonce154b7f0d629eca1bc720aba2484cd4c35daf95a70f2c41621738214d259bbb74
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCMjlDOjRFQ0E5OjZBMTI4OjhERTRCOjY5OEUxMUE5IiwidmlzaXRvcl9pZCI6IjU5MTU3MTk3NDI4ODcxNzA0NzMiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmac68960ad11b34974c561ed17ea86f315a9c2c2ea4089a394b75e470676eaa531c
hovercard-subject-tagrepository:340492126
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/grenaud/Mutation-Simulator
twitter:imagehttps://opengraph.githubassets.com/a902f4db498479d30fb08b8b663307c2dea343cb8d95b87c340e5092dcbd2b73/grenaud/Mutation-Simulator
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/a902f4db498479d30fb08b8b663307c2dea343cb8d95b87c340e5092dcbd2b73/grenaud/Mutation-Simulator
og:image:altMutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations. - grenaud/Mutation-Si...
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonefdf74c91c9ac187cc5cd7b14d4af2d6ef3e18136d002f5d36253f8538e97ee4c
turbo-cache-controlno-preview
go-importgithub.com/grenaud/Mutation-Simulator git https://github.com/grenaud/Mutation-Simulator.git
octolytics-dimension-user_id2168483
octolytics-dimension-user_logingrenaud
octolytics-dimension-repository_id340492126
octolytics-dimension-repository_nwogrenaud/Mutation-Simulator
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forktrue
octolytics-dimension-repository_parent_id248520137
octolytics-dimension-repository_parent_nwomkpython3/Mutation-Simulator
octolytics-dimension-repository_network_root_id248520137
octolytics-dimension-repository_network_root_nwomkpython3/Mutation-Simulator
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release1a5a3e7bbfb3486980e340c242368684156fba87
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fgrenaud%2FMutation-Simulator
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fgrenaud%2FMutation-Simulator
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=grenaud%2FMutation-Simulator
Reloadhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
Reloadhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
Reloadhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
grenaud https://patch-diff.githubusercontent.com/grenaud
Mutation-Simulatorhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
mkpython3/Mutation-Simulatorhttps://patch-diff.githubusercontent.com/mkpython3/Mutation-Simulator
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fgrenaud%2FMutation-Simulator
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fgrenaud%2FMutation-Simulator
Star 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fgrenaud%2FMutation-Simulator
GPL-3.0 license https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/LICENSE
0 stars https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/stargazers
6 forks https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/forks
Branches https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/branches
Tags https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tags
Activity https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fgrenaud%2FMutation-Simulator
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fgrenaud%2FMutation-Simulator
Code https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
Pull requests 0 https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/pulls
Actions https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/actions
Projects 0 https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/projects
Security 0 https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/security
Insights https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/pulse
Code https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
Pull requests https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/pulls
Actions https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/actions
Projects https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/projects
Security https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/security
Insights https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/pulse
Brancheshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/branches
Tagshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tags
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/branches
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tags
42 Commitshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/commits/master/
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/commits/master/
Example RMT fileshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tree/master/Example%20RMT%20files
Example RMT fileshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tree/master/Example%20RMT%20files
Testhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tree/master/Test
Testhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tree/master/Test
pictureshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tree/master/pictures
pictureshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/tree/master/pictures
LICENSEhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/README.md
environment.ymlhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/environment.yml
environment.ymlhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/environment.yml
mutation-simulator.pyhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/mutation-simulator.py
mutation-simulator.pyhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/mutation-simulator.py
rmt-docs.pdfhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/rmt-docs.pdf
rmt-docs.pdfhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/rmt-docs.pdf
READMEhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
GPL-3.0 licensehttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#mutation-simulator
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#changelog
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#version-203
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#version-202
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#version-201
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#motivation
RMThttps://github.com/mkpython3/Mutation-Simulator/blob/master/rmt-docs.pdf
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#features
VCFhttps://samtools.github.io/hts-specs/VCFv4.3.pdf
BEDPEhttps://bedtools.readthedocs.io/en/latest/content/general-usage.html
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#methods
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#args-mode
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#it-mode
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#rmt-mode
RMT Docshttps://github.com/mkpython3/Mutation-Simulator/blob/master/rmt-docs.pdf
Workflowshttps://github.com/mkpython3/Mutation-Simulator/blob/master/README.md#workflows
herehttps://github.com/mkpython3/Mutation-Simulator/tree/master/Example%20RMT%20files
Arabidopsis_thaliana.rmthttps://github.com/mkpython3/Mutation-Simulator/blob/master/Example%20RMT%20files/Arabidopsis_thaliana.rmt
TAIR10_GFF3_genes.gffhttps://www.arabidopsis.org/download_files/Genes/TAIR10_genome_release/TAIR10_gff3/TAIR10_GFF3_genes.gff
Danio_rerio.rmthttps://github.com/mkpython3/Mutation-Simulator/blob/master/Example%20RMT%20files/Danio_rerio.rmt
Danio_rerio.GRCz11.100.gff3.gzhttp://ftp.ensembl.org/pub/release-100/gff3/danio_rerio/Danio_rerio.GRCz11.100.gff3.gz
Drosophila_melanogaster.rmthttps://github.com/mkpython3/Mutation-Simulator/blob/master/Example%20RMT%20files/Drosophila_melanogaster.rmt
Drosophila_melanogaster.BDGP6.28.100.gff3.gzhttp://ftp.ensembl.org/pub/release-100/gff3/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.28.100.gff3.gz
Homo_sapiens.rmthttps://raw.githubusercontent.com/mkpython3/Mutation-Simulator/master/Example%20RMT%20files/Homo_sapiens.rmt
gencode.v34.annotation.gff3.gzhttp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_34/gencode.v34.annotation.gff3.gz
Mus_musculus.rmthttps://github.com/mkpython3/Mutation-Simulator/blob/master/Example%20RMT%20files/Mus_musculus.rmt
Mus_musculus.GRCm38.100.gff3.gzhttp://ftp.ensembl.org/pub/release-100/gff3/mus_musculus/Mus_musculus.GRCm38.100.gff3.gz
how these files were createdhttps://github.com/mkpython3/Mutation-Simulator#gff3-to-rmt
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#installation
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#test-the-installation
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#dependencies
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#how-tos
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#how-to-simulate-snps
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#how-to-simulate-svs
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#how-to-finetune-the-simulation
RMT Docshttps://github.com/mkpython3/Mutation-Simulator/blob/master/rmt-docs.pdf
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#how-to-visualize-mutation-distributions-from-vcfs
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/blob/master/pictures/distplot.png
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#workflows
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#create-rmt-files
Example RMT fileshttps://github.com/mkpython3/Mutation-Simulator/tree/master/Example%20RMT%20files
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#choice-of-input
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#simple-example-for-vcf-to-rmt-conversion
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#multi-sample-vcf
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#multi-mutation-type-vcf
https://software.broadinstitute.org/gatk/documentation/tooldocs/3.8-0/org_broadinstitute_gatk_tools_walkers_variantutils_SelectVariants.phphttps://software.broadinstitute.org/gatk/documentation/tooldocs/3.8-0/org_broadinstitute_gatk_tools_walkers_variantutils_SelectVariants.php
https://samtools.github.io/hts-specs/VCFv4.3.pdfhttps://samtools.github.io/hts-specs/VCFv4.3.pdf
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#gtf-to-rmt
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#gff3-to-rmt
example scripthttps://github.com/mkpython3/Mutation-Simulator/blob/master/Example%20RMT%20files/gff3_genes_2_rmt.py
output RMT fileshttps://github.com/mkpython3/Mutation-Simulator/tree/master/Example%20RMT%20files
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#polyploid-mutations
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#vcf-merge
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#genome-sequences
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#creating-a-heterozygous-diploid-sequence
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#partially-heterozygous-diploid-sequence
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#create-polyploid-mutations
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#performance
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#comparison
E.coli str. K-12https://www.ncbi.nlm.nih.gov/nuccore/NC_000913.3
memory-profilerhttps://pypi.org/project/memory-profiler/
timehttps://www.gnu.org/software/time/
https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#license
GPL 3https://github.com/mkpython3/Mutation-Simulator/blob/master/LICENSE
Readme https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#readme-ov-file
GPL-3.0 license https://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator#GPL-3.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator
Activityhttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/activity
0 starshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/stargazers
0 watchinghttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/watchers
0 forkshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fgrenaud%2FMutation-Simulator&report=grenaud+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/grenaud/Mutation-Simulator/releases
Packages 0https://patch-diff.githubusercontent.com/users/grenaud/packages?repo_name=Mutation-Simulator
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.