René's URL Explorer Experiment

Title: GitHub - google/deepvariant: DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Open Graph Title: GitHub - google/deepvariant: DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

X Title: GitHub - google/deepvariant: DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Description: DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. - google/deepvariant

Open Graph Description: DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. - google/deepvariant

X Description: DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. - google/deepvariant

Opengraph URL: https://github.com/google/deepvariant

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern	/:user_id/:repository
route-controller	files
route-action	disambiguate
fetch-nonce	v2:1857bf53-4ffe-9dcf-ed8d-94217d34fb46
current-catalog-service-hash	f3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id	BC72:33D3A6:7D1287F:A6C6424:696E03E3
html-safe-nonce	1756a9d79861630b01e136583a7797d554060d92369d05822da34a0acfe07597
visitor-payload	eyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCQzcyOjMzRDNBNjo3RDEyODdGOkE2QzY0MjQ6Njk2RTAzRTMiLCJ2aXNpdG9yX2lkIjoiNDM2NzI1NDY4OTczNjk1MDc1NSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac	9382fcbaec37ee6a45e32690c91f24cff003a04c131b25ac7361da1d713c0c21
hovercard-subject-tag	repository:111751293
github-keyboard-shortcuts	repository,copilot
google-site-verification	Apib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-url	https://collector.github.com/github/collect
analytics-location	//
fb:app_id	1401488693436528
apple-itunes-app	app-id=1477376905, app-argument=https://github.com/google/deepvariant
twitter:image	https://opengraph.githubassets.com/70ef110309fcbff10121ba61fcdaba7d3ec51dfa3dbe921c906bf5ef69945f23/google/deepvariant
twitter:card	summary_large_image
og:image	https://opengraph.githubassets.com/70ef110309fcbff10121ba61fcdaba7d3ec51dfa3dbe921c906bf5ef69945f23/google/deepvariant
og:image:alt	DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. - google/deepvariant
og:image:width	1200
og:image:height	600
og:site_name	GitHub
og:type	object
hostname	github.com
expected-hostname	github.com
None	9b5131b207ddd175abf059a848d5f4302ec0606b02211b989013be49cf08593e
turbo-cache-control	no-preview
go-import	github.com/google/deepvariant git https://github.com/google/deepvariant.git
octolytics-dimension-user_id	1342004
octolytics-dimension-user_login	google
octolytics-dimension-repository_id	111751293
octolytics-dimension-repository_nwo	google/deepvariant
octolytics-dimension-repository_public	true
octolytics-dimension-repository_is_fork	false
octolytics-dimension-repository_network_root_id	111751293
octolytics-dimension-repository_network_root_nwo	google/deepvariant
turbo-body-classes	logged-out env-production page-responsive
disable-turbo	false
browser-stats-url	https://api.github.com/_private/browser/stats
browser-errors-url	https://api.github.com/_private/browser/errors
release	f8590a63bfc8093b241930ca57d536c9a50f9680
ui-target	full
theme-color	#1e2327
color-scheme	light dark

Links:

Skip to content	https://patch-diff.githubusercontent.com/google/deepvariant#start-of-content
	https://patch-diff.githubusercontent.com/
Sign in	https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fgoogle%2Fdeepvariant
GitHub CopilotWrite better code with AI	https://github.com/features/copilot
GitHub SparkBuild and deploy intelligent apps	https://github.com/features/spark
GitHub ModelsManage and compare prompts	https://github.com/features/models
MCP RegistryNewIntegrate external tools	https://github.com/mcp
ActionsAutomate any workflow	https://github.com/features/actions
CodespacesInstant dev environments	https://github.com/features/codespaces
IssuesPlan and track work	https://github.com/features/issues
Code ReviewManage code changes	https://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilities	https://github.com/security/advanced-security
Code securitySecure your code as you build	https://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they start	https://github.com/security/advanced-security/secret-protection
Why GitHub	https://github.com/why-github
Documentation	https://docs.github.com
Blog	https://github.blog
Changelog	https://github.blog/changelog
Marketplace	https://github.com/marketplace
View all features	https://github.com/features
Enterprises	https://github.com/enterprise
Small and medium teams	https://github.com/team
Startups	https://github.com/enterprise/startups
Nonprofits	https://github.com/solutions/industry/nonprofits
App Modernization	https://github.com/solutions/use-case/app-modernization
DevSecOps	https://github.com/solutions/use-case/devsecops
DevOps	https://github.com/solutions/use-case/devops
CI/CD	https://github.com/solutions/use-case/ci-cd
View all use cases	https://github.com/solutions/use-case
Healthcare	https://github.com/solutions/industry/healthcare
Financial services	https://github.com/solutions/industry/financial-services
Manufacturing	https://github.com/solutions/industry/manufacturing
Government	https://github.com/solutions/industry/government
View all industries	https://github.com/solutions/industry
View all solutions	https://github.com/solutions
AI	https://github.com/resources/articles?topic=ai
Software Development	https://github.com/resources/articles?topic=software-development
DevOps	https://github.com/resources/articles?topic=devops
Security	https://github.com/resources/articles?topic=security
View all topics	https://github.com/resources/articles
Customer stories	https://github.com/customer-stories
Events & webinars	https://github.com/resources/events
Ebooks & reports	https://github.com/resources/whitepapers
Business insights	https://github.com/solutions/executive-insights
GitHub Skills	https://skills.github.com
Documentation	https://docs.github.com
Customer support	https://support.github.com
Community forum	https://github.com/orgs/community/discussions
Trust center	https://github.com/trust-center
Partners	https://github.com/partners
GitHub SponsorsFund open source developers	https://github.com/sponsors
Security Lab	https://securitylab.github.com
Maintainer Community	https://maintainers.github.com
Accelerator	https://github.com/accelerator
Archive Program	https://archiveprogram.github.com
Topics	https://github.com/topics
Trending	https://github.com/trending
Collections	https://github.com/collections
Enterprise platformAI-powered developer platform	https://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security features	https://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI features	https://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 support	https://github.com/premium-support
Pricing	https://github.com/pricing
Search syntax tips	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentation	https://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in	https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fgoogle%2Fdeepvariant
Sign up	https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=google%2Fdeepvariant
Reload	https://patch-diff.githubusercontent.com/google/deepvariant
Reload	https://patch-diff.githubusercontent.com/google/deepvariant
Reload	https://patch-diff.githubusercontent.com/google/deepvariant
google	https://patch-diff.githubusercontent.com/google
deepvariant	https://patch-diff.githubusercontent.com/google/deepvariant
Notifications	https://patch-diff.githubusercontent.com/login?return_to=%2Fgoogle%2Fdeepvariant
Fork 767	https://patch-diff.githubusercontent.com/login?return_to=%2Fgoogle%2Fdeepvariant
Star 3.6k	https://patch-diff.githubusercontent.com/login?return_to=%2Fgoogle%2Fdeepvariant
BSD-3-Clause license	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/LICENSE
3.6k stars	https://patch-diff.githubusercontent.com/google/deepvariant/stargazers
767 forks	https://patch-diff.githubusercontent.com/google/deepvariant/forks
Branches	https://patch-diff.githubusercontent.com/google/deepvariant/branches
Tags	https://patch-diff.githubusercontent.com/google/deepvariant/tags
Activity	https://patch-diff.githubusercontent.com/google/deepvariant/activity
Star	https://patch-diff.githubusercontent.com/login?return_to=%2Fgoogle%2Fdeepvariant
Notifications	https://patch-diff.githubusercontent.com/login?return_to=%2Fgoogle%2Fdeepvariant
Code	https://patch-diff.githubusercontent.com/google/deepvariant
Issues 1	https://patch-diff.githubusercontent.com/google/deepvariant/issues
Pull requests 0	https://patch-diff.githubusercontent.com/google/deepvariant/pulls
Actions	https://patch-diff.githubusercontent.com/google/deepvariant/actions
Projects 0	https://patch-diff.githubusercontent.com/google/deepvariant/projects
Security Uh oh! There was an error while loading. Please reload this page.	https://patch-diff.githubusercontent.com/google/deepvariant/security
Please reload this page	https://patch-diff.githubusercontent.com/google/deepvariant
Insights	https://patch-diff.githubusercontent.com/google/deepvariant/pulse
Code	https://patch-diff.githubusercontent.com/google/deepvariant
Issues	https://patch-diff.githubusercontent.com/google/deepvariant/issues
Pull requests	https://patch-diff.githubusercontent.com/google/deepvariant/pulls
Actions	https://patch-diff.githubusercontent.com/google/deepvariant/actions
Projects	https://patch-diff.githubusercontent.com/google/deepvariant/projects
Security	https://patch-diff.githubusercontent.com/google/deepvariant/security
Insights	https://patch-diff.githubusercontent.com/google/deepvariant/pulse
Branches	https://patch-diff.githubusercontent.com/google/deepvariant/branches
Tags	https://patch-diff.githubusercontent.com/google/deepvariant/tags
	https://patch-diff.githubusercontent.com/google/deepvariant/branches
	https://patch-diff.githubusercontent.com/google/deepvariant/tags
3,143 Commits	https://patch-diff.githubusercontent.com/google/deepvariant/commits/r1.9/
	https://patch-diff.githubusercontent.com/google/deepvariant/commits/r1.9/
.github	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/.github
.github	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/.github
deeptrio	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/deeptrio
deeptrio	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/deeptrio
deepvariant	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/deepvariant
deepvariant	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/deepvariant
docs	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/docs
docs	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/docs
scripts	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/scripts
scripts	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/scripts
third_party	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/third_party
third_party	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/third_party
tools	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/tools
tools	https://patch-diff.githubusercontent.com/google/deepvariant/tree/r1.9/tools
.bazelrc	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/.bazelrc
.bazelrc	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/.bazelrc
.gitignore	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/.gitignore
.gitignore	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/.gitignore
AUTHORS	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/AUTHORS
AUTHORS	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/AUTHORS
BUILD	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/BUILD
BUILD	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/BUILD
CONTRIBUTING.md	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/CONTRIBUTING.md
CONTRIBUTING.md	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/CONTRIBUTING.md
Dockerfile	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile
Dockerfile	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile
Dockerfile.deepsomatic	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile.deepsomatic
Dockerfile.deepsomatic	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile.deepsomatic
Dockerfile.deeptrio	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile.deeptrio
Dockerfile.deeptrio	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile.deeptrio
Dockerfile.pangenome_aware_deepvariant	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile.pangenome_aware_deepvariant
Dockerfile.pangenome_aware_deepvariant	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/Dockerfile.pangenome_aware_deepvariant
LICENSE	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/LICENSE
LICENSE	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/LICENSE
README.md	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/README.md
README.md	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/README.md
WORKSPACE	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/WORKSPACE
WORKSPACE	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/WORKSPACE
__init__.py	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/__init__.py
__init__.py	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/__init__.py
build-prereq.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/build-prereq.sh
build-prereq.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/build-prereq.sh
build_and_test.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/build_and_test.sh
build_and_test.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/build_and_test.sh
build_release_binaries.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/build_release_binaries.sh
build_release_binaries.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/build_release_binaries.sh
run-prereq.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/run-prereq.sh
run-prereq.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/run-prereq.sh
settings.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/settings.sh
settings.sh	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/settings.sh
setup.py	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/setup.py
setup.py	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/setup.py
README	https://patch-diff.githubusercontent.com/google/deepvariant
Code of conduct	https://patch-diff.githubusercontent.com/google/deepvariant
Contributing	https://patch-diff.githubusercontent.com/google/deepvariant
BSD-3-Clause license	https://patch-diff.githubusercontent.com/google/deepvariant
Security	https://patch-diff.githubusercontent.com/google/deepvariant
	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/images/dv_logo.png
	https://github.com/google/deepvariant/releases
	https://groups.google.com/d/forum/deepvariant-announcements
	https://goo.gl/deepvariant
whole genome	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-case-study.md
whole exome	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-exome-case-study.md
PacBio case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-pacbio-model-case-study.md
Simplex case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-ont-r104-simplex-case-study.md
T7 case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-complete-t7-case-study.md
G400 case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-complete-g400-case-study.md
Roche SBX case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/roche-sbx-case-study.md
vg case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-vg-case-study.md
PacBio Iso-Seq/MAS-Seq case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-masseq-case-study.md
Illumina RNA-seq Case Study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-rnaseq-case-study.md
hybrid case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-hybrid-case-study.md
Mapped with BWA	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/pangenome-aware-wgs-bwa-case-study.md
Mapped with VG	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/pangenome-aware-wgs-vg-case-study.md
Mapped with BWA	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/pangenome-aware-wes-bwa-case-study.md
DeepSomatic	https://github.com/google/deepsomatic
blog post on non-human variant-calling	https://google.github.io/deepvariant/posts/2018-12-05-improved-non-human-variant-calling-using-species-specific-deepvariant-models/
	https://patch-diff.githubusercontent.com/google/deepvariant#deeptrio
this page	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deeptrio-details.md
whole genome	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deeptrio-wgs-case-study.md
PacBio case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deeptrio-pacbio-case-study.md
GLnexus	https://github.com/dnanexus-rnd/GLnexus
	https://patch-diff.githubusercontent.com/google/deepvariant#how-to-run-deepvariant
DeepVariant haploid support	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-haploid-support.md
DeepVariant X, Y case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-xy-calling-case-study.md
GRCh38_par.bed	https://storage.googleapis.com/deepvariant/case-study-testdata/GRCh38_PAR.bed
GRCh37_par.bed	https://storage.googleapis.com/deepvariant/case-study-testdata/GRCh37_PAR.bed
Quick Start	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-quick-start.md
Fast Pipeline case study	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-fast-pipeline-case-study.md
Full documentation list	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/README.md
Detailed usage guide	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-details.md
Best practices for multi-sample variant calling with DeepVariant	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/trio-merge-case-study.md
(Advanced) Training tutorial	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-training-case-study.md
DeepVariant's Frequently Asked Questions, FAQ	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/FAQ.md
	https://patch-diff.githubusercontent.com/google/deepvariant#how-to-cite
A universal SNP and small-indel variant caller using deep neural networks. Nature Biotechnology 36, 983–987 (2018).	https://rdcu.be/7Dhl
https://doi.org/10.1038/nbt.4235	https://doi.org/10.1038/nbt.4235
DeepVariant and GLnexus Best Practices	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/trio-merge-case-study.md
Accurate, scalable cohort variant calls using DeepVariant and GLnexus. Bioinformatics (2021).	https://doi.org/10.1093/bioinformatics/btaa1081
https://doi.org/10.1093/bioinformatics/btaa1081	https://doi.org/10.1093/bioinformatics/btaa1081
	https://patch-diff.githubusercontent.com/google/deepvariant#why-use-deepvariant
PrecisionFDA Truth Challenge V2	https://precision.fda.gov/challenges/10/results
PrecisionFDA Truth Challenge	https://precision.fda.gov/challenges/truth/results
lower coverage	https://google.github.io/deepvariant/posts/2019-09-10-twenty-is-the-new-thirty-comparing-current-and-historical-wgs-accuracy-across-coverage/
metrics	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/metrics.md
PCR-positive	https://ai.googleblog.com/2018/04/deepvariant-accuracy-improvements-for.html
low quality sequencing runs	https://blog.dnanexus.com/2018-01-16-evaluating-the-performance-of-ngs-pipelines-on-noisy-wgs-data/
different sequencing technologies	https://google.github.io/deepvariant/posts/2019-01-14-highly-accurate-snp-and-indel-calling-on-pacbio-ccs-with-deepvariant/
non-human species	https://google.github.io/deepvariant/posts/2018-12-05-improved-non-human-variant-calling-using-species-specific-deepvariant-models/
metrics	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/metrics.md
	https://patch-diff.githubusercontent.com/google/deepvariant#how-deepvariant-works
	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/images/inference_flow_diagram.svg
"Looking through DeepVariant's Eyes" blog post	https://google.github.io/deepvariant/posts/2020-02-20-looking-through-deepvariants-eyes/
Nucleus	https://github.com/google/nucleus
TensorFlow	https://www.tensorflow.org/
Using Nucleus and TensorFlow for DNA Sequencing Error Correction	https://google.github.io/deepvariant/posts/2019-01-31-using-nucleus-and-tensorflow-for-dna-sequencing-error-correction/
	https://patch-diff.githubusercontent.com/google/deepvariant#deepvariant-setup
	https://patch-diff.githubusercontent.com/google/deepvariant#prerequisites
	https://patch-diff.githubusercontent.com/google/deepvariant#official-solutions
Genomics team in Google Health	https://health.google/health-research/
Docker	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-quick-start.md
Build from source	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/docs/deepvariant-build-test.md
gs://deepvariant/	https://console.cloud.google.com/storage/browser/deepvariant
	https://patch-diff.githubusercontent.com/google/deepvariant#contribution-guidelines
open a pull request	https://github.com/google/deepvariant/compare
release notes	https://github.com/google/deepvariant/releases
open an issue	https://github.com/google/deepvariant/issues/new
BioStars	https://www.biostars.org/
	https://patch-diff.githubusercontent.com/google/deepvariant#license
BSD-3-Clause license	https://patch-diff.githubusercontent.com/google/deepvariant/blob/r1.9/LICENSE
	https://patch-diff.githubusercontent.com/google/deepvariant#acknowledgements
Boost Graph Library	http://www.boost.org/doc/libs/1_65_1/libs/graph/doc/index.html
abseil-cpp	https://github.com/abseil/abseil-cpp
abseil-py	https://github.com/abseil/abseil-py
pybind11	https://github.com/pybind/pybind11
GNU Parallel	https://www.gnu.org/software/parallel/
htslib & samtools	http://www.htslib.org/
Nucleus	https://github.com/google/nucleus
numpy	http://www.numpy.org/
SSW Library	https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
TensorFlow	https://www.tensorflow.org/
	https://patch-diff.githubusercontent.com/google/deepvariant#disclaimer
science	https://patch-diff.githubusercontent.com/topics/science
machine-learning	https://patch-diff.githubusercontent.com/topics/machine-learning
bioinformatics	https://patch-diff.githubusercontent.com/topics/bioinformatics
deep-learning	https://patch-diff.githubusercontent.com/topics/deep-learning
genomics	https://patch-diff.githubusercontent.com/topics/genomics
genome	https://patch-diff.githubusercontent.com/topics/genome
tensorflow	https://patch-diff.githubusercontent.com/topics/tensorflow
ngs	https://patch-diff.githubusercontent.com/topics/ngs
sequencing	https://patch-diff.githubusercontent.com/topics/sequencing
dna	https://patch-diff.githubusercontent.com/topics/dna
deep-neural-network	https://patch-diff.githubusercontent.com/topics/deep-neural-network
deepvariant	https://patch-diff.githubusercontent.com/topics/deepvariant
Readme	https://patch-diff.githubusercontent.com/google/deepvariant#readme-ov-file
BSD-3-Clause license	https://patch-diff.githubusercontent.com/google/deepvariant#BSD-3-Clause-1-ov-file
Code of conduct	https://patch-diff.githubusercontent.com/google/deepvariant#coc-ov-file
Contributing	https://patch-diff.githubusercontent.com/google/deepvariant#contributing-ov-file
Security policy	https://patch-diff.githubusercontent.com/google/deepvariant#security-ov-file
Please reload this page	https://patch-diff.githubusercontent.com/google/deepvariant
Activity	https://patch-diff.githubusercontent.com/google/deepvariant/activity
Custom properties	https://patch-diff.githubusercontent.com/google/deepvariant/custom-properties
3.6k stars	https://patch-diff.githubusercontent.com/google/deepvariant/stargazers
156 watching	https://patch-diff.githubusercontent.com/google/deepvariant/watchers
767 forks	https://patch-diff.githubusercontent.com/google/deepvariant/forks
Report repository	https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fgoogle%2Fdeepvariant&report=google+%28user%29
Releases 24	https://patch-diff.githubusercontent.com/google/deepvariant/releases
v1.10.0-beta Latest Oct 9, 2025	https://patch-diff.githubusercontent.com/google/deepvariant/releases/tag/v1.10.0-beta
+ 23 releases	https://patch-diff.githubusercontent.com/google/deepvariant/releases
Packages 0	https://patch-diff.githubusercontent.com/orgs/google/packages?repo_name=deepvariant
Please reload this page	https://patch-diff.githubusercontent.com/google/deepvariant
Contributors 32	https://patch-diff.githubusercontent.com/google/deepvariant/graphs/contributors
	https://github.com/pichuan
	https://github.com/akolesnikov
	https://github.com/cmclean
	https://github.com/danielecook
	https://github.com/kishwarshafin
	https://github.com/MariaNattestad
	https://github.com/nmousavi
	https://github.com/lucasbrambrink
	https://github.com/gunjanbaid
	https://github.com/sgoe1
	https://github.com/tedyun
	https://github.com/rpoplin
	https://github.com/scott7z
+ 18 contributors	https://patch-diff.githubusercontent.com/google/deepvariant/graphs/contributors
Python 55.7%	https://patch-diff.githubusercontent.com/google/deepvariant/search?l=python
C++ 35.0%	https://patch-diff.githubusercontent.com/google/deepvariant/search?l=c%2B%2B
Shell 5.6%	https://patch-diff.githubusercontent.com/google/deepvariant/search?l=shell
Starlark 3.3%	https://patch-diff.githubusercontent.com/google/deepvariant/search?l=starlark
Dockerfile 0.4%	https://patch-diff.githubusercontent.com/google/deepvariant/search?l=dockerfile
	https://github.com
Terms	https://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacy	https://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Security	https://github.com/security
Status	https://www.githubstatus.com/
Community	https://github.community/
Docs	https://docs.github.com/
Contact	https://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.