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Title: GitHub - dynverse/dynmethods: A collection of 50+ trajectory inference methods within a common interface 📥📤

Open Graph Title: GitHub - dynverse/dynmethods: A collection of 50+ trajectory inference methods within a common interface 📥📤

X Title: GitHub - dynverse/dynmethods: A collection of 50+ trajectory inference methods within a common interface 📥📤

Description: A collection of 50+ trajectory inference methods within a common interface 📥📤 - dynverse/dynmethods

Open Graph Description: A collection of 50+ trajectory inference methods within a common interface 📥📤 - dynverse/dynmethods

X Description: A collection of 50+ trajectory inference methods within a common interface 📥📤 - dynverse/dynmethods

Opengraph URL: https://github.com/dynverse/dynmethods

X: @github

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	https://hub.docker.com/r/dynverse/ti_projected_dpt
	https://github.com/dynverse/ti_projected_dpt/actions?query=workflow%3Amake
code	https://github.com/dynverse/ti_projected_monocle
	https://hub.docker.com/r/dynverse/ti_projected_monocle
	https://github.com/dynverse/ti_projected_monocle/actions?query=workflow%3Amake
	https://doi.org/10.1101/208819
code	https://github.com/dynverse/ti_projected_paga
	https://hub.docker.com/r/dynverse/ti_projected_paga
	https://github.com/dynverse/ti_projected_paga/actions?query=workflow%3Amake
	https://doi.org/10.1186/s12864-018-4772-0
code	https://github.com/dynverse/ti_projected_slingshot
	https://hub.docker.com/r/dynverse/ti_projected_slingshot
	https://github.com/dynverse/ti_projected_slingshot/actions?query=workflow%3Amake
code	https://github.com/dynverse/ti_projected_tscan
	https://hub.docker.com/r/dynverse/ti_projected_tscan
	https://github.com/dynverse/ti_projected_tscan/actions?query=workflow%3Amake
	https://doi.org/10.1016/j.stem.2016.05.010
code	https://github.com/dynverse/ti_raceid_stemid
	https://hub.docker.com/r/dynverse/ti_raceid_stemid
	https://github.com/dynverse/ti_raceid_stemid/actions?query=workflow%3Amake
	https://github.com/dgrun
	https://github.com/avolab
	https://doi.org/10.1142/9789813207813_0053
code	https://github.com/dynverse/ti_scimitar
	https://hub.docker.com/r/dynverse/ti_scimitar
	https://github.com/dynverse/ti_scimitar/actions?query=workflow%3Amake
	https://github.com/dimenwarper
	https://doi.org/10.1101/079509
code	https://github.com/dynverse/ti_scorpius
	https://hub.docker.com/r/dynverse/ti_scorpius
	https://github.com/dynverse/ti_scorpius/actions?query=workflow%3Amake
	https://orcid.org/0000-0003-3641-729X
	https://github.com/rcannood
	https://orcid.org/0000-0002-7114-6248
	https://github.com/zouter
	https://github.com/saeyslab
	https://doi.org/10.1186/s12859-016-1109-3
code	https://github.com/dynverse/ti_scoup
	https://hub.docker.com/r/dynverse/ti_scoup
	https://github.com/dynverse/ti_scoup/actions?query=workflow%3Amake
	https://github.com/hmatsu1226
	https://doi.org/10.1073/pnas.1408993111
code	https://github.com/dynverse/ti_scuba
	https://hub.docker.com/r/dynverse/ti_scuba
	https://github.com/dynverse/ti_scuba/actions?query=workflow%3Amake
	https://github.com/eugeniomarco
	https://github.com/GGiecold
	https://orcid.org/0000-0002-2283-4714
	https://github.com/gcyuan
	https://doi.org/10.1093/nar/gkw1278
code	https://github.com/dynverse/ti_slice
	https://hub.docker.com/r/dynverse/ti_slice
	https://github.com/dynverse/ti_slice/actions?query=workflow%3Amake
	https://github.com/xu-lab
	https://github.com/minzheguo
	https://doi.org/10.1186/s13059-016-0975-3
code	https://github.com/dynverse/ti_slicer
	https://hub.docker.com/r/dynverse/ti_slicer
	https://github.com/dynverse/ti_slicer/actions?query=workflow%3Amake
	https://github.com/jw156605
	https://doi.org/10.1038/ncb3493
code	https://github.com/dynverse/ti_stemnet
	https://hub.docker.com/r/dynverse/ti_stemnet
	https://github.com/dynverse/ti_stemnet/actions?query=workflow%3Amake
	https://orcid.org/0000-0002-1233-5874
	https://doi.org/10.1093/bioinformatics/btv368
code	https://github.com/dynverse/ti_sincell
	https://hub.docker.com/r/dynverse/ti_sincell
	https://github.com/dynverse/ti_sincell/actions?query=workflow%3Amake
	https://github.com/Cortalak
	https://doi.org/10.1186/s12864-018-4772-0
code	https://github.com/dynverse/ti_slingshot
	https://hub.docker.com/r/dynverse/ti_slingshot
	https://github.com/dynverse/ti_slingshot/actions?query=workflow%3Amake
	https://github.com/kstreet13
	https://orcid.org/0000-0002-6069-8629
	https://github.com/sandrinedudoit
	https://doi.org/10.1093/nar/gkw430
code	https://github.com/dynverse/ti_tscan
	https://hub.docker.com/r/dynverse/ti_tscan
	https://github.com/dynverse/ti_tscan/actions?query=workflow%3Amake
	https://github.com/zji90
	https://doi.org/10.1126/science.aar3131
code	https://github.com/dynverse/ti_urd
	https://hub.docker.com/r/dynverse/ti_urd
	https://github.com/dynverse/ti_urd/actions?query=workflow%3Amake
	https://github.com/farrellja
	https://doi.org/10.1016/j.cell.2014.04.005
code	https://github.com/dynverse/ti_wanderlust
	https://hub.docker.com/r/dynverse/ti_wanderlust
	https://github.com/dynverse/ti_wanderlust/actions?query=workflow%3Amake
	https://github.com/ManuSetty
	https://orcid.org/0000-0002-9259-8817
	https://doi.org/10.1016/j.stem.2015.07.013
code	https://github.com/dynverse/ti_waterfall
	https://hub.docker.com/r/dynverse/ti_waterfall
	https://github.com/dynverse/ti_waterfall/actions?query=workflow%3Amake
	https://doi.org/10.1038/nbt.3569
code	https://github.com/dynverse/ti_wishbone
	https://hub.docker.com/r/dynverse/ti_wishbone
	https://github.com/dynverse/ti_wishbone/actions?query=workflow%3Amake
	https://github.com/ManuSetty
	https://orcid.org/0000-0002-9259-8817
	https://doi.org/10.1186/s12859-016-1175-6
code	https://github.com/dynverse/ti_celltree_gibbs
	https://hub.docker.com/r/dynverse/ti_celltree_gibbs
	https://github.com/dynverse/ti_celltree_gibbs/actions?query=workflow%3Amake
	https://orcid.org/0000-0003-2836-0502
	https://github.com/david-duverle
	https://orcid.org/0000-0002-4288-1606
	https://github.com/tsudalab
	https://doi.org/10.1186/s12859-016-1175-6
code	https://github.com/dynverse/ti_celltree_maptpx
	https://hub.docker.com/r/dynverse/ti_celltree_maptpx
	https://github.com/dynverse/ti_celltree_maptpx/actions?query=workflow%3Amake
	https://orcid.org/0000-0003-2836-0502
	https://github.com/david-duverle
	https://orcid.org/0000-0002-4288-1606
	https://github.com/tsudalab
	https://doi.org/10.1186/s12859-016-1175-6
code	https://github.com/dynverse/ti_celltree_vem
	https://hub.docker.com/r/dynverse/ti_celltree_vem
	https://github.com/dynverse/ti_celltree_vem/actions?query=workflow%3Amake
	https://orcid.org/0000-0003-2836-0502
	https://github.com/david-duverle
	https://orcid.org/0000-0002-4288-1606
	https://github.com/tsudalab
	https://doi.org/10.1101/060442
code	https://github.com/dynverse/ti_ouija
	https://hub.docker.com/r/dynverse/ti_ouija
	https://github.com/dynverse/ti_ouija/actions?query=workflow%3Amake
	https://github.com/kieranrcampbell
	https://orcid.org/0000-0001-7615-8523
	https://doi.org/10.1101/060442
code	https://github.com/dynverse/ti_ouijaflow
	https://hub.docker.com/r/dynverse/ti_ouijaflow
	https://github.com/dynverse/ti_ouijaflow/actions?query=workflow%3Amake
	https://github.com/kieranrcampbell
	https://doi.org/10.1016/j.cels.2017.10.012
code	https://github.com/dynverse/ti_pcreode
	https://hub.docker.com/r/dynverse/ti_pcreode
	https://github.com/dynverse/ti_pcreode/actions?query=workflow%3Amake
	https://github.com/herrinca
	https://github.com/KenLauLab
	https://doi.org/10.1371/journal.pcbi.1005212
code	https://github.com/dynverse/ti_pseudogp
	https://hub.docker.com/r/dynverse/ti_pseudogp
	https://github.com/dynverse/ti_pseudogp/actions?query=workflow%3Amake
	https://github.com/kieranrcampbell
	https://orcid.org/0000-0001-7615-8523
	https://doi.org/10.1038/s41467-017-00039-z
code	https://github.com/dynverse/ti_recat
	https://hub.docker.com/r/dynverse/ti_recat
	https://github.com/dynverse/ti_recat/actions?query=workflow%3Amake
	https://github.com/louhzmaki
	https://doi.org/10.1101/057778
code	https://github.com/dynverse/ti_topslam
	https://hub.docker.com/r/dynverse/ti_topslam
	https://github.com/dynverse/ti_topslam/actions?query=workflow%3Amake
	https://github.com/mzwiessele
	https://patch-diff.githubusercontent.com/dynverse/dynmethods#sources
Anthony Gitter’s single-cell-pseudotime	https://github.com/agitter/single-cell-pseudotime
	https://doi.org/10.5281/zenodo.1297423
Sean Davis’ awesome-single-cell	https://github.com/seandavi/awesome-single-cell
	https://doi.org/10.5281/zenodo.1294021
Luke Zappia’s scRNA-tools	https://www.scrna-tools.org
	https://doi.org/10.1101/206573
	https://patch-diff.githubusercontent.com/dynverse/dynmethods#new-methods
issues	https://github.com/dynverse/dynmethods/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc+label%3Anew_method
	https://patch-diff.githubusercontent.com/dynverse/dynmethods#latest-changes
NEWS.md	https://patch-diff.githubusercontent.com/dynverse/dynmethods/blob/master/NEWS.md
	https://patch-diff.githubusercontent.com/dynverse/dynmethods#recent-changes-in-dynmethods-110-unreleased
	https://patch-diff.githubusercontent.com/dynverse/dynmethods#recent-changes-in-dynmethods-105-03-07-2019
	https://patch-diff.githubusercontent.com/dynverse/dynmethods#dynverse-dependencies
	https://patch-diff.githubusercontent.com/dynverse/dynmethods/blob/master/man/figures/dependencies.png
dynverse.org	https://dynverse.org
bioinformatics-algorithms	https://patch-diff.githubusercontent.com/topics/bioinformatics-algorithms
single-cell-rna-seq	https://patch-diff.githubusercontent.com/topics/single-cell-rna-seq
single-cell-analysis	https://patch-diff.githubusercontent.com/topics/single-cell-analysis
trajectory-inference-methods	https://patch-diff.githubusercontent.com/topics/trajectory-inference-methods
trajectory-inference	https://patch-diff.githubusercontent.com/topics/trajectory-inference
pseudotemporal-ordering	https://patch-diff.githubusercontent.com/topics/pseudotemporal-ordering
Readme	https://patch-diff.githubusercontent.com/dynverse/dynmethods#readme-ov-file
Unknown LICENSE	https://patch-diff.githubusercontent.com/dynverse/dynmethods/blob/master/LICENSE
MIT LICENSE.md	https://patch-diff.githubusercontent.com/dynverse/dynmethods/blob/master/LICENSE.md
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Custom properties	https://patch-diff.githubusercontent.com/dynverse/dynmethods/custom-properties
133 stars	https://patch-diff.githubusercontent.com/dynverse/dynmethods/stargazers
9 watching	https://patch-diff.githubusercontent.com/dynverse/dynmethods/watchers
28 forks	https://patch-diff.githubusercontent.com/dynverse/dynmethods/forks
Report repository	https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fdynverse%2Fdynmethods&report=dynverse+%28user%29
Releases	https://patch-diff.githubusercontent.com/dynverse/dynmethods/releases
Packages 0	https://patch-diff.githubusercontent.com/orgs/dynverse/packages?repo_name=dynmethods
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