René's URL Explorer Experiment


Title: GitHub - ctlab/ImmGenOpenSource: scripts for RNAseq data processing by GAM-clustering

Open Graph Title: GitHub - ctlab/ImmGenOpenSource: scripts for RNAseq data processing by GAM-clustering

X Title: GitHub - ctlab/ImmGenOpenSource: scripts for RNAseq data processing by GAM-clustering

Description: scripts for RNAseq data processing by GAM-clustering - ctlab/ImmGenOpenSource

Open Graph Description: scripts for RNAseq data processing by GAM-clustering - ctlab/ImmGenOpenSource

X Description: scripts for RNAseq data processing by GAM-clustering - ctlab/ImmGenOpenSource

Opengraph URL: https://github.com/ctlab/ImmGenOpenSource

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:b9952609-2aa9-baa6-8e81-60d03a33f97e
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8DA0:3931C6:712058:91606A:69905047
html-safe-nonceb7deeb63a0d9350e220dd9458e57f71a18f5ef7e62e2e262a62d16d77e4f556d
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4REEwOjM5MzFDNjo3MTIwNTg6OTE2MDZBOjY5OTA1MDQ3IiwidmlzaXRvcl9pZCI6IjI5NTY5Nzg3MDA1NjYwNzgxNSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac826defd8373031c57856b18a176f4dfd353656139f249eaee4af6af70a0f75c2
hovercard-subject-tagrepository:225628188
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/ctlab/ImmGenOpenSource
twitter:imagehttps://opengraph.githubassets.com/169492012b426664a5a2a58a7029177a9033bb9f8f2cb588ca29fdb4a46a53de/ctlab/ImmGenOpenSource
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/169492012b426664a5a2a58a7029177a9033bb9f8f2cb588ca29fdb4a46a53de/ctlab/ImmGenOpenSource
og:image:altscripts for RNAseq data processing by GAM-clustering - ctlab/ImmGenOpenSource
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None42c603b9d642c4a9065a51770f75e5e27132fef0e858607f5c9cb7e422831a7b
turbo-cache-controlno-preview
go-importgithub.com/ctlab/ImmGenOpenSource git https://github.com/ctlab/ImmGenOpenSource.git
octolytics-dimension-user_id6031276
octolytics-dimension-user_loginctlab
octolytics-dimension-repository_id225628188
octolytics-dimension-repository_nwoctlab/ImmGenOpenSource
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id225628188
octolytics-dimension-repository_network_root_nwoctlab/ImmGenOpenSource
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3b33c5aedc9808f45bc5fcf0b1e4404cf749dac7
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fctlab%2FImmGenOpenSource
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fctlab%2FImmGenOpenSource
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=ctlab%2FImmGenOpenSource
Reloadhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
Reloadhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
Reloadhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
ctlab https://patch-diff.githubusercontent.com/ctlab
ImmGenOpenSourcehttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fctlab%2FImmGenOpenSource
Fork 2 https://patch-diff.githubusercontent.com/login?return_to=%2Fctlab%2FImmGenOpenSource
Star 1 https://patch-diff.githubusercontent.com/login?return_to=%2Fctlab%2FImmGenOpenSource
MIT license https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/LICENSE
1 star https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/stargazers
2 forks https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/forks
Branches https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/branches
Tags https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tags
Activity https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fctlab%2FImmGenOpenSource
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fctlab%2FImmGenOpenSource
Code https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
Issues 0 https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/issues
Pull requests 0 https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/pulls
Actions https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/actions
Projects 0 https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/projects
Security 0 https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/security
Insights https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/pulse
Code https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
Issues https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/issues
Pull requests https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/pulls
Actions https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/actions
Projects https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/projects
Security https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/security
Insights https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/pulse
Brancheshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/branches
Tagshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tags
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/branches
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tags
14 Commitshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/commits/master/
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/commits/master/
Datahttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/Data
Datahttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/Data
GAMhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/GAM
GAMhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/GAM
SupplDatahttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/SupplData
SupplDatahttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/SupplData
readmePicshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/readmePics
readmePicshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/tree/master/readmePics
Fig1_datasetOverview.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig1_datasetOverview.R
Fig1_datasetOverview.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig1_datasetOverview.R
Fig1_genesEtcSuppl.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig1_genesEtcSuppl.R
Fig1_genesEtcSuppl.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig1_genesEtcSuppl.R
Fig1_pathways.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig1_pathways.R
Fig1_pathways.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig1_pathways.R
Fig3_PCA.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig3_PCA.R
Fig3_PCA.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig3_PCA.R
Fig3_heatmapAndEtc.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig3_heatmapAndEtc.R
Fig3_heatmapAndEtc.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig3_heatmapAndEtc.R
Fig3_modulesAnno.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig3_modulesAnno.R
Fig3_modulesAnno.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig3_modulesAnno.R
Fig4_radarCharts.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig4_radarCharts.R
Fig4_radarCharts.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig4_radarCharts.R
Fig567_merging12.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig567_merging12.R
Fig567_merging12.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig567_merging12.R
Fig8.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig8.R
Fig8.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Fig8.R
LICENSEhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/README.md
modulesAnnotation.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/modulesAnnotation.R
modulesAnnotation.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/modulesAnnotation.R
modulesDeriving.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/modulesDeriving.R
modulesDeriving.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/modulesDeriving.R
rawDataProcessing.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/rawDataProcessing.R
rawDataProcessing.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/rawDataProcessing.R
sgmwcshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/sgmwcs
sgmwcshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/sgmwcs
sgmwcs-slurm-batchhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/sgmwcs-slurm-batch
sgmwcs-slurm-batchhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/sgmwcs-slurm-batch
utils.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/utils.R
utils.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/utils.R
READMEhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
MIT licensehttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#immgen-open-source
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#scripts-for-rnaseq-data-processing-by-gam-clustering
ImmGenhttp://www.immgen.org/
GSE122108https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE122108
Gene expression heatmaphttps://artyomovlab.wustl.edu/phantasus/?preloaded=ImmGen_total_Eduw0mei4
PCA with samples annotationhttp://artyomovlab.wustl.edu/publications/supp_materials/Immgen/PCADatasetOverview.html
Heatmap of metabolic moduleshttps://artyomovlab.wustl.edu/phantasus/?session=x039baa087a35e7
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#requirments
Rhttps://www.r-project.org/
sgmwcs-solverhttps://github.com/ctlab/sgmwcs-solver
KEGG mouse metabolic networkhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/GAM
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#input-data
Raw countshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/Data/OSMNP_unnormalized_genes_count_10_3_18.count_table
rawDataProcessing.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#modules-deriving
modulesDeriving.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/readmePics/github.pic.m5.png
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master/readmePics/github.m.centers.png
https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#modules-annotation
modulesAnnotation.Rhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/blob/master
Readme https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource
Activityhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/activity
Custom propertieshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/custom-properties
1 starhttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/stargazers
3 watchinghttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/watchers
2 forkshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fctlab%2FImmGenOpenSource&report=ctlab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/ctlab/packages?repo_name=ImmGenOpenSource
HTML 96.4% https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/search?l=html
R 3.6% https://patch-diff.githubusercontent.com/ctlab/ImmGenOpenSource/search?l=r
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.