René's URL Explorer Experiment


Title: GitHub - cortex-lab/allenCCF: Tools to work with Allen Inst CCF data in matlab

Open Graph Title: GitHub - cortex-lab/allenCCF: Tools to work with Allen Inst CCF data in matlab

X Title: GitHub - cortex-lab/allenCCF: Tools to work with Allen Inst CCF data in matlab

Description: Tools to work with Allen Inst CCF data in matlab. Contribute to cortex-lab/allenCCF development by creating an account on GitHub.

Open Graph Description: Tools to work with Allen Inst CCF data in matlab. Contribute to cortex-lab/allenCCF development by creating an account on GitHub.

X Description: Tools to work with Allen Inst CCF data in matlab. Contribute to cortex-lab/allenCCF development by creating an account on GitHub.

Opengraph URL: https://github.com/cortex-lab/allenCCF

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:58c3f3f4-05b5-6a11-3dfb-d2a374d92f9c
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id999E:335286:5A64CBE:7B6B36D:698CE505
html-safe-nonceceabc7f679a4d644e256961c124ca9043f6adfff322a8554098785197882e70c
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5OTlFOjMzNTI4Njo1QTY0Q0JFOjdCNkIzNkQ6Njk4Q0U1MDUiLCJ2aXNpdG9yX2lkIjoiNzY4ODYwMTExNTAzODYzOTM2NSIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac7e1a3f313a783269a2d7a1c52a993d0d0da9b64890f8512a348a80bd1f4faf74
hovercard-subject-tagrepository:87840844
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/cortex-lab/allenCCF
twitter:imagehttps://opengraph.githubassets.com/3a3d6e29f992a7119ef17e626005b6e694974bba9d184ff170b3e41cd8d2c4fc/cortex-lab/allenCCF
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/3a3d6e29f992a7119ef17e626005b6e694974bba9d184ff170b3e41cd8d2c4fc/cortex-lab/allenCCF
og:image:altTools to work with Allen Inst CCF data in matlab. Contribute to cortex-lab/allenCCF development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/cortex-lab/allenCCF git https://github.com/cortex-lab/allenCCF.git
octolytics-dimension-user_id15247073
octolytics-dimension-user_logincortex-lab
octolytics-dimension-repository_id87840844
octolytics-dimension-repository_nwocortex-lab/allenCCF
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id87840844
octolytics-dimension-repository_network_root_nwocortex-lab/allenCCF
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fcortex-lab%2FallenCCF
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fcortex-lab%2FallenCCF
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=cortex-lab%2FallenCCF
Reloadhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
Reloadhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
Reloadhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
cortex-lab https://patch-diff.githubusercontent.com/cortex-lab
allenCCFhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fcortex-lab%2FallenCCF
Fork 79 https://patch-diff.githubusercontent.com/login?return_to=%2Fcortex-lab%2FallenCCF
Star 145 https://patch-diff.githubusercontent.com/login?return_to=%2Fcortex-lab%2FallenCCF
145 stars https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/stargazers
79 forks https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/forks
Branches https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/branches
Tags https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tags
Activity https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fcortex-lab%2FallenCCF
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fcortex-lab%2FallenCCF
Code https://patch-diff.githubusercontent.com/cortex-lab/allenCCF
Issues 28 https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/issues
Pull requests 2 https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/pulls
Actions https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/actions
Projects 0 https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/projects
Wiki https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/wiki
Security 0 https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/security
Insights https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/pulse
Code https://patch-diff.githubusercontent.com/cortex-lab/allenCCF
Issues https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/issues
Pull requests https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/pulls
Actions https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/actions
Projects https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/projects
Wiki https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/wiki
Security https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/security
Insights https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/pulse
Brancheshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/branches
Tagshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tags
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/branches
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tags
246 Commitshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/commits/master/
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/commits/master/
Browsing Functionshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tree/master/Browsing%20Functions
Browsing Functionshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tree/master/Browsing%20Functions
Histology Functionshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tree/master/Histology%20Functions
Histology Functionshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tree/master/Histology%20Functions
SHARP-Trackhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tree/master/SHARP-Track
SHARP-Trackhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/tree/master/SHARP-Track
.gitignorehttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/.gitignore
CCF_to_FP.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/CCF_to_FP.csv
CCF_to_FP.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/CCF_to_FP.csv
FP_table_Chon_2020.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/FP_table_Chon_2020.csv
FP_table_Chon_2020.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/FP_table_Chon_2020.csv
README.mdhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/README.md
setup_utils.mhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/setup_utils.m
setup_utils.mhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/setup_utils.m
structure_tree_safe.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/structure_tree_safe.csv
structure_tree_safe.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/structure_tree_safe.csv
structure_tree_safe_2017.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/structure_tree_safe_2017.csv
structure_tree_safe_2017.csvhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/blob/master/structure_tree_safe_2017.csv
READMEhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#allen-ccf-tools
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#requirements
The npy-matlab repositoryhttp://github.com/kwikteam/npy-matlab
The Allen Mouse Brain Atlas volume and annotationshttps://dx.doi.org/10.6084/m9.figshare.25365829
https://alleninstitute.github.io/AllenSDK/reference_space.htmlhttps://alleninstitute.github.io/AllenSDK/reference_space.html
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#neuropixels-trajectory-gui-allen_ccf_npx
https://github.com/petersaj/neuropixels_trajectory_explorerhttps://github.com/petersaj/neuropixels_trajectory_explorer
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#slice-histology-alignment-registration-and-probe-track-analysis-sharp-track
our bioRxiv paperhttps://www.biorxiv.org/content/early/2018/10/19/447995
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#to-run-the-atlas-browser
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#to-plot-wire-mesh-of-brain
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#note-about-annotation-volume
https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#source
http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/
http://help.brain-map.org/download/attachments/8323525/Mouse_Common_Coordinate_Framework.pdf?version=3&modificationDate=1508178848279&api=v2http://help.brain-map.org/download/attachments/8323525/Mouse_Common_Coordinate_Framework.pdf?version=3&modificationDate=1508178848279&api=v2
Readme https://patch-diff.githubusercontent.com/cortex-lab/allenCCF#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
Activityhttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/activity
Custom propertieshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/custom-properties
145 starshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/stargazers
12 watchinghttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/watchers
79 forkshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fcortex-lab%2FallenCCF&report=cortex-lab+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/cortex-lab/packages?repo_name=allenCCF
Please reload this pagehttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
Contributors 10https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/cortex-lab/allenCCF
MATLAB 100.0% https://patch-diff.githubusercontent.com/cortex-lab/allenCCF/search?l=matlab
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.