René's URL Explorer Experiment


Title: GitHub - comprna/modkitopt: Optimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection

Open Graph Title: GitHub - comprna/modkitopt: Optimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection

X Title: GitHub - comprna/modkitopt: Optimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection

Description: Optimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection - comprna/modkitopt

Open Graph Description: Optimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection - comprna/modkitopt

X Description: Optimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection - comprna/modkitopt

Opengraph URL: https://github.com/comprna/modkitopt

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:369a1437-b49a-3c6d-8246-2072c5076a7d
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id8560:3B98E7:F3616B:130FB88:697ECAB3
html-safe-nonce6205bf774975232bf7ba78e1f3a58f2f6ea81444fc1072473fc009db12ed3560
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4NTYwOjNCOThFNzpGMzYxNkI6MTMwRkI4ODo2OTdFQ0FCMyIsInZpc2l0b3JfaWQiOiI1OTQwOTkzMTg1ODgxNzA1MTM5IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac32d2c0d0504090b73cf9f85866e7688108297b4ccb25445a42e3a341b5098773
hovercard-subject-tagrepository:897727411
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/comprna/modkitopt
twitter:imagehttps://opengraph.githubassets.com/cfbc828da42e6d2412561dadf7d8932400d7792a55a3fd2ec808f90fd99c64d0/comprna/modkitopt
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/cfbc828da42e6d2412561dadf7d8932400d7792a55a3fd2ec808f90fd99c64d0/comprna/modkitopt
og:image:altOptimise modkit parameters and stoichiometry cutoff for accurate nanopore-based RNA modification detection - comprna/modkitopt
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None60279d4097367e16897439d16d6bbe4180663db828c666eeed2656988ffe59f6
turbo-cache-controlno-preview
go-importgithub.com/comprna/modkitopt git https://github.com/comprna/modkitopt.git
octolytics-dimension-user_id23315864
octolytics-dimension-user_logincomprna
octolytics-dimension-repository_id897727411
octolytics-dimension-repository_nwocomprna/modkitopt
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id897727411
octolytics-dimension-repository_network_root_nwocomprna/modkitopt
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release7c85641c598ad130c74f7bcc27f58575cac69551
ui-targetcanary-1
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/comprna/modkitopt#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fcomprna%2Fmodkitopt
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fcomprna%2Fmodkitopt
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=comprna%2Fmodkitopt
Reloadhttps://patch-diff.githubusercontent.com/comprna/modkitopt
Reloadhttps://patch-diff.githubusercontent.com/comprna/modkitopt
Reloadhttps://patch-diff.githubusercontent.com/comprna/modkitopt
comprna https://patch-diff.githubusercontent.com/comprna
modkitopthttps://patch-diff.githubusercontent.com/comprna/modkitopt
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fcomprna%2Fmodkitopt
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Fcomprna%2Fmodkitopt
Star 4 https://patch-diff.githubusercontent.com/login?return_to=%2Fcomprna%2Fmodkitopt
MIT license https://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/LICENSE
4 stars https://patch-diff.githubusercontent.com/comprna/modkitopt/stargazers
0 forks https://patch-diff.githubusercontent.com/comprna/modkitopt/forks
Branches https://patch-diff.githubusercontent.com/comprna/modkitopt/branches
Tags https://patch-diff.githubusercontent.com/comprna/modkitopt/tags
Activity https://patch-diff.githubusercontent.com/comprna/modkitopt/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fcomprna%2Fmodkitopt
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fcomprna%2Fmodkitopt
Code https://patch-diff.githubusercontent.com/comprna/modkitopt
Issues 0 https://patch-diff.githubusercontent.com/comprna/modkitopt/issues
Pull requests 0 https://patch-diff.githubusercontent.com/comprna/modkitopt/pulls
Actions https://patch-diff.githubusercontent.com/comprna/modkitopt/actions
Projects 0 https://patch-diff.githubusercontent.com/comprna/modkitopt/projects
Security 0 https://patch-diff.githubusercontent.com/comprna/modkitopt/security
Insights https://patch-diff.githubusercontent.com/comprna/modkitopt/pulse
Code https://patch-diff.githubusercontent.com/comprna/modkitopt
Issues https://patch-diff.githubusercontent.com/comprna/modkitopt/issues
Pull requests https://patch-diff.githubusercontent.com/comprna/modkitopt/pulls
Actions https://patch-diff.githubusercontent.com/comprna/modkitopt/actions
Projects https://patch-diff.githubusercontent.com/comprna/modkitopt/projects
Security https://patch-diff.githubusercontent.com/comprna/modkitopt/security
Insights https://patch-diff.githubusercontent.com/comprna/modkitopt/pulse
Brancheshttps://patch-diff.githubusercontent.com/comprna/modkitopt/branches
Tagshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tags
https://patch-diff.githubusercontent.com/comprna/modkitopt/branches
https://patch-diff.githubusercontent.com/comprna/modkitopt/tags
94 Commitshttps://patch-diff.githubusercontent.com/comprna/modkitopt/commits/main/
https://patch-diff.githubusercontent.com/comprna/modkitopt/commits/main/
binhttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/bin
binhttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/bin
imageshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/images
imageshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/images
moduleshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/modules
moduleshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/modules
profileshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/profiles
profileshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/profiles
resourceshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/resources
resourceshttps://patch-diff.githubusercontent.com/comprna/modkitopt/tree/main/resources
LICENSEhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/README.md
env.yamlhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/env.yaml
env.yamlhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/env.yaml
main.nfhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/main.nf
main.nfhttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/main.nf
nextflow.confighttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/nextflow.config
nextflow.confighttps://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/nextflow.config
READMEhttps://patch-diff.githubusercontent.com/comprna/modkitopt
MIT licensehttps://patch-diff.githubusercontent.com/comprna/modkitopt
https://patch-diff.githubusercontent.com/comprna/modkitopt#modkitopt
https://patch-diff.githubusercontent.com/comprna/modkitopt#why-use-modkitopt
https://patch-diff.githubusercontent.com/comprna/modkitopt#how-modkitopt-works
https://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/images/design.png
https://patch-diff.githubusercontent.com/comprna/modkitopt#citation
https://patch-diff.githubusercontent.com/comprna/modkitopt#quick-start
https://patch-diff.githubusercontent.com/comprna/modkitopt#step-1-clone-the-repository
https://patch-diff.githubusercontent.com/comprna/modkitopt#step-2-install-dependencies
https://patch-diff.githubusercontent.com/comprna/modkitopt#download-modkit
modkit release pagehttps://github.com/nanoporetech/modkit/releases
https://patch-diff.githubusercontent.com/comprna/modkitopt#install-conda--nextflow
Miniconda installation guidehttps://www.anaconda.com/docs/getting-started/miniconda/install
installation guidehttps://www.nextflow.io/docs/latest/install.html
https://patch-diff.githubusercontent.com/comprna/modkitopt#install-conda-environment
https://patch-diff.githubusercontent.com/comprna/modkitopt#step-3-run-modkitopt-demo
https://patch-diff.githubusercontent.com/comprna/modkitopt#step-4-run-modkitopt-on-your-own-dataset
https://patch-diff.githubusercontent.com/comprna/modkitopt#command-example
Command detailshttps://patch-diff.githubusercontent.com/comprna/modkitopt#command-details
how to specify your HPC environment detailshttps://patch-diff.githubusercontent.com/comprna/modkitopt#specifying-your-hpc-environment-details
https://patch-diff.githubusercontent.com/comprna/modkitopt#recommended-run-in-an-hpc-environment
https://patch-diff.githubusercontent.com/comprna/modkitopt#resources-to-request
https://patch-diff.githubusercontent.com/comprna/modkitopt#tested-hpc-environments
gadihttps://nci.org.au/our-systems/hpc-systems
run ModkitOpt using -profile localhttps://patch-diff.githubusercontent.com/comprna/modkitopt#nextflow-not-working-try-running-with-local-profile
https://patch-diff.githubusercontent.com/comprna/modkitopt#specifying-your-hpc-environment-details
https://patch-diff.githubusercontent.com/comprna/modkitopt#nextflow-not-working-try-running-with-local-profile
https://patch-diff.githubusercontent.com/comprna/modkitopt#resuming-an-interrupted-run
https://patch-diff.githubusercontent.com/comprna/modkitopt#command-details
https://patch-diff.githubusercontent.com/comprna/modkitopt#output-details
https://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/images/barplot.png
Advanced outputshttps://patch-diff.githubusercontent.com/comprna/modkitopt#advanced-outputs
https://patch-diff.githubusercontent.com/comprna/modkitopt#estimated-run-time
gadihttps://nci.org.au/our-systems/hpc-systems
https://patch-diff.githubusercontent.com/comprna/modkitopt#tested-environments-and-software-versions
https://patch-diff.githubusercontent.com/comprna/modkitopt#advanced-use
https://patch-diff.githubusercontent.com/comprna/modkitopt#overriding-the-default-nextflow-parameters
https://patch-diff.githubusercontent.com/comprna/modkitopt#advanced-outputs
https://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/images/scatterplot.png
https://patch-diff.githubusercontent.com/comprna/modkitopt/blob/main/images/pr_curves.png
Readme https://patch-diff.githubusercontent.com/comprna/modkitopt#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/comprna/modkitopt#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/comprna/modkitopt
Activityhttps://patch-diff.githubusercontent.com/comprna/modkitopt/activity
Custom propertieshttps://patch-diff.githubusercontent.com/comprna/modkitopt/custom-properties
4 starshttps://patch-diff.githubusercontent.com/comprna/modkitopt/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/comprna/modkitopt/watchers
0 forkshttps://patch-diff.githubusercontent.com/comprna/modkitopt/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fcomprna%2Fmodkitopt&report=comprna+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/comprna/modkitopt/releases
Packages 0https://patch-diff.githubusercontent.com/orgs/comprna/packages?repo_name=modkitopt
Nextflow 53.1% https://patch-diff.githubusercontent.com/comprna/modkitopt/search?l=nextflow
R 30.9% https://patch-diff.githubusercontent.com/comprna/modkitopt/search?l=r
Python 16.0% https://patch-diff.githubusercontent.com/comprna/modkitopt/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.