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Title: GitHub - canmod/macpan2: Tools for building and calibrating compartmental models of infectious disease.

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Description: Tools for building and calibrating compartmental models of infectious disease. - canmod/macpan2

Open Graph Description: Tools for building and calibrating compartmental models of infectious disease. - canmod/macpan2

X Description: Tools for building and calibrating compartmental models of infectious disease. - canmod/macpan2

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https://canmod.r-universe.dev/macpan2
https://github.com/canmod/macpan2/actions/workflows/R-CMD-check.yaml
https://doi.org/10.5281/zenodo.14796217
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Milwid et al. 2023https://patch-diff.githubusercontent.com/canmod/macpan2#ref-milwid2023mpox
PHAC 2024https://patch-diff.githubusercontent.com/canmod/macpan2#ref-phac2024measles
interactive measles modelhttps://wzmli.shinyapps.io/two_pop_measles_shiny/
Simmons et al. 2025https://patch-diff.githubusercontent.com/canmod/macpan2#ref-simmons2025cost
Miranda et al. 2025https://patch-diff.githubusercontent.com/canmod/macpan2#ref-miranda2024strategies
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Anokye et al. 2025https://patch-diff.githubusercontent.com/canmod/macpan2#ref-Anokye2025.09.26.25336738
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TMB enginehttps://canmod.github.io/macpan2/articles/cpp_side
Project history and trajectoryhttps://canmod.net/misc/pyRC
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Workshop noteshttps://canmod.github.io/macpan-workshop
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Visual macpan2 model builderhttps://canmod.github.io/macpan2-model-builder/
https://patch-diff.githubusercontent.com/canmod/macpan2#installation
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https://patch-diff.githubusercontent.com/canmod/macpan2#hello-world
SI modelhttps://github.com/canmod/macpan2/blob/main/inst/starter_models/si/README.md
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designed to combine with standard data prep and plotting tools in Rhttps://canmod.github.io/macpan2/articles/quickstart.html#processing-results
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https://patch-diff.githubusercontent.com/canmod/macpan2#workshops
current workshop noteshttps://canmod.github.io/macpan-workshop/
2025-03-20https://canmod.github.io/macpan-workshop
2024-02-22https://elliottlab.ca/technique.html
2023-11-14https://www.birs.ca/events/2023/5-day-workshops/23w5151/schedule
International Clinics on Infectious Disease Dynamics and Data (ICI3D) Programhttps://www.ici3d.org/
specify simple compartmental models and simulate from themhttps://github.com/ICI3D/RTutorials/blob/master/mpLabCompartmental.R
specify an HIV model and fit it to datahttps://github.com/ICI3D/RTutorials/blob/master/mpLabFitting.R
https://patch-diff.githubusercontent.com/canmod/macpan2#product-management
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https://doi.org/10.1101/2025.09.26.25336738https://doi.org/10.1101/2025.09.26.25336738
https://doi.org/10.1002/jmv.29256https://doi.org/10.1002/jmv.29256
https://doi.org/10.1001/jamanetworkopen.2025.15534https://doi.org/10.1001/jamanetworkopen.2025.15534
https://www.canada.ca/en/public-health/services/emergency-preparedness-response/rapid-risk-assessments-public-health-professionals/rapid-risk-assessment-measles-public-health-implications-2024.htmlhttps://www.canada.ca/en/public-health/services/emergency-preparedness-response/rapid-risk-assessments-public-health-professionals/rapid-risk-assessment-measles-public-health-implications-2024.html
https://nccid.ca/covid-19-phac-modelling-group/https://nccid.ca/covid-19-phac-modelling-group/
https://doi.org/10.1016/j.jvacx.2025.100660https://doi.org/10.1016/j.jvacx.2025.100660
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