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Title: GitHub - bpucker/Overview: Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.

Open Graph Title: GitHub - bpucker/Overview: Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.

X Title: GitHub - bpucker/Overview: Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories.

Description: Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific repositories. - bpucker/Overview

Open Graph Description: Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific reposit...

X Description: Overview of repositories associated with @bpucker & @PuckerLab. This covers science communication projects, the developed bioinformatics tools, teaching activities, and project specific rep...

Opengraph URL: https://github.com/bpucker/Overview

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https://github.com/bpucker/PBBtools
https://patch-diff.githubusercontent.com/bpucker/Overview#1-science-communication
MybMondayhttps://github.com/bpucker/MybMonday
https://patch-diff.githubusercontent.com/bpucker/Overview#11-mybmonday
#MybMondayhttps://github.com/bpucker/MybMonday
https://github.com/bpucker/MybMonday
FlavonoidFridayhttps://github.com/bpucker/FlavonoidFriday
https://patch-diff.githubusercontent.com/bpucker/Overview#12-flavonoidfriday
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https://patch-diff.githubusercontent.com/bpucker/Overview#21-knowledge-based-identification-of-pathway-enzymes-kipes
KIPEs repositoryhttps://github.com/bpucker/KIPEs
our web serverhttps://pbb-tools.de/KIPEs/
'Automatic Identification of Players in the Flavonoid Biosynthesis with Application on the Biomedicinal Plant Croton tiglium'https://www.mdpi.com/2223-7747/9/9/1103/htm
'KIPEs3: Automatic annotation of biosynthesis pathways'https://doi.org/10.1371/journal.pone.0294342
https://github.com/bpucker/KIPEs
https://patch-diff.githubusercontent.com/bpucker/Overview#22-myb_annotator
MYB_annotator repositoryhttps://github.com/bpucker/MYB_annotator
our web serverhttps://pbb-tools.de/MYB_annotator/
'Automatic identification and annotation of MYB gene family members in plants'https://doi.org/10.1186/s12864-022-08452-5
https://github.com/bpucker/MYB_annotator
https://patch-diff.githubusercontent.com/bpucker/Overview#23-mapping-based-genome-size-estimation-mgse
MGSE repositoryhttps://github.com/bpucker/MGSE
'Mapping-based genome size estimation'https://doi.org/10.1186/s12864-025-11640-8
https://github.com/bpucker/MGSE
https://patch-diff.githubusercontent.com/bpucker/Overview#24-neighborhood-aware-variant-impact-predictor-navip
NAVIP repositoryhttps://github.com/bpucker/NAVIP
'NAVIP: Unraveling the influence of neighboring small sequence variants on functional impact prediction'https://doi.org/10.1371/journal.pcbi.1012732
https://github.com/bpucker/NAVIP
https://patch-diff.githubusercontent.com/bpucker/Overview#25-bhlh_annotator
bHLH_annotator repositoryhttps://github.com/bpucker/bHLH_annotator
our web serverhttps://pbb-tools.de/bHLH_annotator/
'Automatic annotation of the bHLH gene family in plants'https://doi.org/10.1186/s12864-023-09877-2
https://github.com/bpucker/bHLH_annotator
https://patch-diff.githubusercontent.com/bpucker/Overview#3-teaching--uni-bielefeld
https://patch-diff.githubusercontent.com/bpucker/Overview#31-applied-python-programming-for-life-scientists-appls
APPLS repositoryhttps://github.com/bpucker/APPLS
https://github.com/bpucker/APPLS
https://patch-diff.githubusercontent.com/bpucker/Overview#32-applied-plant-genomics
AGR repositoryhttps://github.com/bpucker/AppliedGenomeResearch
https://github.com/bpucker/AppliedGenomeResearch
https://patch-diff.githubusercontent.com/bpucker/Overview#33-molecular-methods-in-genome-research
MMGR repositoryhttps://github.com/bpucker/MolecularMethodsInGenomeResearch
https://github.com/bpucker/MolecularMethodsInGenomeResearch
https://patch-diff.githubusercontent.com/bpucker/Overview#4-teaching--tu-braunschweig
https://patch-diff.githubusercontent.com/bpucker/Overview#41-introduction-to-biochemistry-and-bioinformatics-of-plants-mb09
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ApiaceaeFNS1https://github.com/bpucker/ApiaceaeFNS1
Apiaceae FNS I originated from F3H through tandem gene duplicationhttps://doi.org/10.1101/2022.02.16.480750
https://patch-diff.githubusercontent.com/bpucker/Overview#62-co-expression-analysis
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The report of anthocyanins in the betalain-pigmented genus Hylocereus is not well evidenced and is not a strong basis to refute the mutual exclusion paradigmhttps://doi.org/10.1186/s12870-021-03080-9
The evidence for anthocyanins in the betalain-pigmented genus Hylocereus is weakhttps://doi.org/10.1101/2021.11.16.468878
https://patch-diff.githubusercontent.com/bpucker/Overview#64-long-read-walker
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https://patch-diff.githubusercontent.com/bpucker/Overview#65-genotyping-gabi-kat-lines-with-ont-long-reads
GKseqhttps://github.com/bpucker/GKseq
Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesishttps://doi.org/10.1186/s12864-021-07877-8
loretahttps://github.com/nkleinbo/loreta
https://patch-diff.githubusercontent.com/bpucker/Overview#66-navip
NAVIPhttps://github.com/bpucker/NAVIP
Influence of neighboring small sequence variants on functional impact predictionhttps://doi.org/10.1101/596718
https://patch-diff.githubusercontent.com/bpucker/Overview#67-mapper-and-variant-caller-comparison
Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Datahttps://www.mdpi.com/2223-7747/9/4/439/htm
variant callinghttps://github.com/bpucker/variant_calling
https://patch-diff.githubusercontent.com/bpucker/Overview#68-yam-genome-sequence
yamhttps://github.com/bpucker/yam
High Contiguity de novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencinghttps://www.mdpi.com/2073-4425/11/3/274/htm
https://patch-diff.githubusercontent.com/bpucker/Overview#69-non-canonical-splice-sites
ncsshttps://github.com/bpucker/ncss2018
Genome-wide analyses supported by RNA-Seq reveal non-canonical splice sites in plant genomeshttps://doi.org/10.1186/s12864-018-5360-z
Animal, Fungi, and Plant Genome Sequences Harbor Different Non-Canonical Splice Siteshttps://www.mdpi.com/2073-4409/9/2/458/htm
https://patch-diff.githubusercontent.com/bpucker/Overview#610-investigation-of-the-at7-genome
At7https://github.com/bpucker/At7
Twenty-Five Years of Propagation in Suspension Cell Culture Results in Substantial Alterations of the Arabidopsis Thaliana Genomehttps://www.mdpi.com/2073-4425/10/9/671/htm
https://patch-diff.githubusercontent.com/bpucker/Overview#611-nd-1-genome
Nd-1https://github.com/bpucker/Nd1_PacBio
A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene sethttps://doi.org/10.1371/journal.pone.0216233
https://patch-diff.githubusercontent.com/bpucker/Overview#612-analysis-of-pepd-structure
PEPDhttps://github.com/bpucker/PEPD
Harnessing natural diversity to identify key amino acid residues in prolidasehttps://doi.org/10.1101/423475
https://github.com/bpucker/CaryoAnthoBlockhttps://github.com/bpucker/CaryoAnthoBlock
https://patch-diff.githubusercontent.com/bpucker/Overview#7-collection-of-bioinformatic-tools
PuckerLabhttps://www.pbb.uni-bonn.de
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BioinfToolServerhttps://www.pbb-tools.de
https://patch-diff.githubusercontent.com/bpucker/Overview#references
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