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{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"A \"get_interval_sequences\" for other file types?","articleBody":"Hi, thanks for creating this wonderful package! \r\n\r\nIs it possible to efficiently extract the entries from a file (BED/BAM/VCF) that correspond to a given set of intervals without having to go through the whole file as shown in your [Enformer example](https://github.com/knutdrand/enformer_assesment_reproduction/blob/master/enformer_assesment_reproduction/cli.py)?\r\n\r\nI was looking for something along the lines of [`get_interval_sequences`](https://github.com/bionumpy/bionumpy/blob/b7d4e1d09c95748b3b64944d5aa042d5e1cd6ae4/bionumpy/io/indexed_fasta.py#L164) but for the rest of file types. I am quite new in the `bionumpy` framework so most likely I missed this option from the tutorials...\r\n\r\nThanks a lot in advance! Best,\r\n\r\nMiquel","author":{"url":"https://github.com/MiqG","@type":"Person","name":"MiqG"},"datePublished":"2024-10-21T07:56:22.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":4},"url":"https://github.com/80/bionumpy/issues/80"}