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Title: Parsing of FASTA header into name and description differs from ADAM · Issue #2 · biojava/biojava-adam · GitHub

Open Graph Title: Parsing of FASTA header into name and description differs from ADAM · Issue #2 · biojava/biojava-adam

X Title: Parsing of FASTA header into name and description differs from ADAM · Issue #2 · biojava/biojava-adam

Description: scala> import org.biojava.nbio.adam.BiojavaAdamContext scala> val biojavaContext = new BiojavaAdamContext(sc) scala> val dna = sc.loadBiojavaFastaDna("../adam/adam-core/src/test/resources/HLA_DQB1_05_01_01_02.fa") scala> val dna = biojav...

Open Graph Description: scala> import org.biojava.nbio.adam.BiojavaAdamContext scala> val biojavaContext = new BiojavaAdamContext(sc) scala> val dna = sc.loadBiojavaFastaDna("../adam/adam-core/src/test/resources/HLA_DQB1_...

X Description: scala> import org.biojava.nbio.adam.BiojavaAdamContext scala> val biojavaContext = new BiojavaAdamContext(sc) scala> val dna = sc.loadBiojavaFastaDna("../adam/adam-core/src/test/resou...

Opengraph URL: https://github.com/biojava/biojava-adam/issues/2

X: @github

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Domain: patch-diff.githubusercontent.com

Hey, it has json ld scripts: 
{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"Parsing of FASTA header into name and description differs from ADAM","articleBody":"```\r\nscala\u003e  import org.biojava.nbio.adam.BiojavaAdamContext\r\nscala\u003e  val biojavaContext = new BiojavaAdamContext(sc)\r\n\r\nscala\u003e val dna = sc.loadBiojavaFastaDna(\"../adam/adam-core/src/test/resources/HLA_DQB1_05_01_01_02.fa\")\r\nscala\u003e val dna = biojavaContext.loadBiojavaFastaDna(\"../adam/adam-core/src/test/resources/HLA_DQB1_05_01_01_02.fa\")\r\n\r\nscala\u003e dna.rdd.first\r\n\r\nres6: org.bdgenomics.formats.avro.Sequence = {\r\n\"name\": \"HLA-DQB1*05:01:01:02\\tHLA06615 7090 bp\", \"description\": null,\r\n\"alphabet\": \"DNA\", \"sequence\": \"TTCTAAGACCTTTGCTCTTCTCCCCAGGACTTAAGGCTCTTCAGCGTGTCTAAGACAACAGCAGTAAAAATTTCTGTGACAGCAATTTTCTCTCCCCTGAAATATGATCCCCACCTAATTTGCTTTATTAAAAATCCCAAGTATAATAACAACTGGTTTTTAACAATATTACAGAGATGTTTACTGTTGAATTGCATTTTTCTTTTGCCTCTCAAAATCCCTGAGGAATTTGTTCTTCAGCTCTTCTATAATCGAGAGGAAATTTTCACCTCAGATGTTCATCCAGTGCAATTGGAAGACGTCACAGTGCCAGGCACTGGATTGAGAACCTTCACAAAAAAAAATGTCTGCCCAGAGACAGATGAGGTCCTTCAGCTCCAGTGCTGATTGGTTCTTTTCCAAGCGACCATCCAATCCTGCCACGCACGGAAACATCCACAGGTTTTTATTCTTTCTGCCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTTTTCCCTTCGTCTCAATTATGTCTTGGAAGAAGTCTTTGCGGATCCCCGGAGACCTTCGGGTAGCAACTGTCACCTTGATGCTGGCGATCCTGAGCTCCTCACTGGCTGAGGGCAGAGACTCTCCCGGTAAGTGCAGGAAAG...\r\n\r\nscala\u003e val dna = biojavaContext.loadFastaDna(\"../adam/adam-core/src/test/resources/HLA_DQB1_05_01_01_02.fa\")\r\n\r\nscala\u003e dna.rdd.first\r\n\r\nres8: org.bdgenomics.formats.avro.Sequence = {\r\n\"name\": \"HLA-DQB1*05:01:01:02\", \"description\": \"HLA06615 7090 bp\",\r\n\"alphabet\": \"DNA\", \"sequence\": \"TTCTAAGACCTTTGCTCTTCTCCCCAGGACTTAAGGCTCTTCAGCGTGTCTAAGACAACAGCAGTAAAAATTTCTGTGACAGCAATTTTCTCTCCCCTGAAATATGATCCCCACCTAATTTGCTTTATTAAAAATCCCAAGTATAATAACAACTGGTTTTTAACAATATTACAGAGATGTTTACTGTTGAATTGCATTTTTCTTTTGCCTCTCAAAATCCCTGAGGAATTTGTTCTTCAGCTCTTCTATAATCGAGAGGAAATTTTCACCTCAGATGTTCATCCAGTGCAATTGGAAGACGTCACAGTGCCAGGCACTGGATTGAGAACCTTCACAAAAAAAAATGTCTGCCCAGAGACAGATGAGGTCCTTCAGCTCCAGTGCTGATTGGTTCTTTTCCAAGCGACCATCCAATCCTGCCACGCACGGAAACATCCACAGGTTTTTATTCTTTCTGCCAGGTACATCAGATCCATCAGGTCTGAGCTGTGTTGACTACCACTACTTTTCCCTTCGTCTCAATTATGTCTTGGAAGAAGTCTTTGCGGATCCCCGGAGACCTTCGGGTAGCAACTGTCACCTTGATGCTGGCGATCCTGAGCTCCTCACTGGCTGAGGGCAGAGACTCTCCCGGTAAGTGCAGGAAAGCTGC...\r\n```","author":{"url":"https://github.com/heuermh","@type":"Person","name":"heuermh"},"datePublished":"2018-02-02T16:32:16.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":0},"url":"https://github.com/2/biojava-adam/issues/2"}
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og:image:altscala> import org.biojava.nbio.adam.BiojavaAdamContext scala> val biojavaContext = new BiojavaAdamContext(sc) scala> val dna = sc.loadBiojavaFastaDna("../adam/adam-core/src/test/resources/HLA_DQB1_...
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