René's URL Explorer Experiment


Title: Parsing PDB-IHM CIF files by josemduarte · Pull Request #1108 · biojava/biojava · GitHub

Open Graph Title: Parsing PDB-IHM CIF files by josemduarte · Pull Request #1108 · biojava/biojava

X Title: Parsing PDB-IHM CIF files by josemduarte · Pull Request #1108 · biojava/biojava

Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - Parsing PDB-IHM CIF files by josemduarte · Pull Request #1108 · biojava/biojava

Open Graph Description: Lenient cif parsing: allowing more missing fields. Also improved logging for the case of no atom_site

X Description: Lenient cif parsing: allowing more missing fields. Also improved logging for the case of no atom_site

Opengraph URL: https://github.com/biojava/biojava/pull/1108

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository/pull/:id/commits(.:format)
route-controllerpull_requests
route-actioncommits
fetch-noncev2:cd8fe1c8-b991-fe9f-8ff1-e1da97200d87
current-catalog-service-hashae870bc5e265a340912cde392f23dad3671a0a881730ffdadd82f2f57d81641b
request-idD22C:22CCE7:D36F6E:117FF1E:69740C30
html-safe-nonce8f5725443296247da957c89beb741af8f731b71910b6ec5abb0845debc88c9aa
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJEMjJDOjIyQ0NFNzpEMzZGNkU6MTE3RkYxRTo2OTc0MEMzMCIsInZpc2l0b3JfaWQiOiI3NjI0OTYyMjc5NjY5NTAwOTc2IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacc68c973c210137600a9a06566759ea60f05cf3718ca46f554bcc1afb0b91879a
hovercard-subject-tagpull_request:2365415606
github-keyboard-shortcutsrepository,pull-request-list,pull-request-conversation,pull-request-files-changed,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location///pull_requests/show/commits
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/biojava/biojava/pull/1108/commits
twitter:imagehttps://opengraph.githubassets.com/bccb553104d116ea6c2f051d9f54b7d4844ba181d805530de069c50677746061/biojava/biojava/pull/1108
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/bccb553104d116ea6c2f051d9f54b7d4844ba181d805530de069c50677746061/biojava/biojava/pull/1108
og:image:altLenient cif parsing: allowing more missing fields. Also improved logging for the case of no atom_site
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
og:author:usernamejosemduarte
hostnamegithub.com
expected-hostnamegithub.com
None59b702da6e0daafaa39128183fb631c1ac58292fa7c764b7482070a04fb5b4a1
turbo-cache-controlno-cache
go-importgithub.com/biojava/biojava git https://github.com/biojava/biojava.git
octolytics-dimension-user_id237402
octolytics-dimension-user_loginbiojava
octolytics-dimension-repository_id9199359
octolytics-dimension-repository_nwobiojava/biojava
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id9199359
octolytics-dimension-repository_network_root_nwobiojava/biojava
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3cb518f5e73629eee4767718742673274eb03bd7
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1108%2Fcommits
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fbiojava%2Fbiojava%2Fpull%2F1108%2Fcommits
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fpull_requests%2Fshow%2Fcommits&source=header-repo&source_repo=biojava%2Fbiojava
Reloadhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits
Reloadhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits
Reloadhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits
biojava https://patch-diff.githubusercontent.com/biojava
biojavahttps://patch-diff.githubusercontent.com/biojava/biojava
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fbiojava%2Fbiojava
Fork 395 https://patch-diff.githubusercontent.com/login?return_to=%2Fbiojava%2Fbiojava
Star 623 https://patch-diff.githubusercontent.com/login?return_to=%2Fbiojava%2Fbiojava
Code https://patch-diff.githubusercontent.com/biojava/biojava
Issues 67 https://patch-diff.githubusercontent.com/biojava/biojava/issues
Pull requests 2 https://patch-diff.githubusercontent.com/biojava/biojava/pulls
Actions https://patch-diff.githubusercontent.com/biojava/biojava/actions
Security 0 https://patch-diff.githubusercontent.com/biojava/biojava/security
Insights https://patch-diff.githubusercontent.com/biojava/biojava/pulse
Code https://patch-diff.githubusercontent.com/biojava/biojava
Issues https://patch-diff.githubusercontent.com/biojava/biojava/issues
Pull requests https://patch-diff.githubusercontent.com/biojava/biojava/pulls
Actions https://patch-diff.githubusercontent.com/biojava/biojava/actions
Security https://patch-diff.githubusercontent.com/biojava/biojava/security
Insights https://patch-diff.githubusercontent.com/biojava/biojava/pulse
josemduartehttps://patch-diff.githubusercontent.com/josemduarte
masterhttps://patch-diff.githubusercontent.com/biojava/biojava/tree/master
cif-ihmhttps://patch-diff.githubusercontent.com/biojava/biojava/tree/cif-ihm
Conversationhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108
Commits6 (6)https://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits
Checkshttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/checks
Files changedhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/files
Parsing PDB-IHM CIF fileshttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits#top
josemduartehttps://patch-diff.githubusercontent.com/josemduarte
masterhttps://patch-diff.githubusercontent.com/biojava/biojava/tree/master
cif-ihmhttps://patch-diff.githubusercontent.com/biojava/biojava/tree/cif-ihm
Deal with some missing fields in IHMhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/a6723d42a22166de949bed6a6c4f4f1f29a87ee7
https://patch-diff.githubusercontent.com/josemduarte
josemduartehttps://patch-diff.githubusercontent.com/biojava/biojava/commits?author=josemduarte
a6723d4https://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/a6723d42a22166de949bed6a6c4f4f1f29a87ee7
https://patch-diff.githubusercontent.com/biojava/biojava/tree/a6723d42a22166de949bed6a6c4f4f1f29a87ee7
Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_refhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/8286260589643583c6d631a989b708b4d8c7b956
https://patch-diff.githubusercontent.com/josemduarte
josemduartehttps://patch-diff.githubusercontent.com/biojava/biojava/commits?author=josemduarte
8286260https://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/8286260589643583c6d631a989b708b4d8c7b956
https://patch-diff.githubusercontent.com/biojava/biojava/tree/8286260589643583c6d631a989b708b4d8c7b956
Logginghttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/58136fe36f4c0c25d3227580e9e3d0b7f869dc7d
https://patch-diff.githubusercontent.com/josemduarte
josemduartehttps://patch-diff.githubusercontent.com/biojava/biojava/commits?author=josemduarte
58136fehttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/58136fe36f4c0c25d3227580e9e3d0b7f869dc7d
https://patch-diff.githubusercontent.com/biojava/biojava/tree/58136fe36f4c0c25d3227580e9e3d0b7f869dc7d
Revert "Dealing with struct_ref_seq_dif strand_id by referencing through struct_ref_seq and struct_ref"https://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/fdf98644c046416531cb53da0f67e8b7fc6a44cf
https://patch-diff.githubusercontent.com/josemduarte
josemduartehttps://patch-diff.githubusercontent.com/biojava/biojava/commits?author=josemduarte
fdf9864https://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/fdf98644c046416531cb53da0f67e8b7fc6a44cf
https://patch-diff.githubusercontent.com/biojava/biojava/tree/fdf98644c046416531cb53da0f67e8b7fc6a44cf
Deal with missing strand_idhttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/2841770e794679818e8eab458b387d157b97f9ec
https://patch-diff.githubusercontent.com/josemduarte
josemduartehttps://patch-diff.githubusercontent.com/biojava/biojava/commits?author=josemduarte
2841770https://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/2841770e794679818e8eab458b387d157b97f9ec
https://patch-diff.githubusercontent.com/biojava/biojava/tree/2841770e794679818e8eab458b387d157b97f9ec
Update biojava-structure/src/main/java/org/biojava/nbio/structure/io/cif/CifStructureConsumerImpl.javahttps://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/48cb462e137a17d5161f390bbf265a11bc4f48ee
josemduartehttps://patch-diff.githubusercontent.com/biojava/biojava/commits?author=josemduarte
sbittrichhttps://patch-diff.githubusercontent.com/biojava/biojava/commits?author=sbittrich
48cb462https://patch-diff.githubusercontent.com/biojava/biojava/pull/1108/commits/48cb462e137a17d5161f390bbf265a11bc4f48ee
https://patch-diff.githubusercontent.com/biojava/biojava/tree/48cb462e137a17d5161f390bbf265a11bc4f48ee
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.