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Title: GitHub · Where software is built

Open Graph Title: biojava/biojava

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Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - biojava/biojava

Open Graph Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - biojava/biojava

X Description: :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. - biojava/biojava

Opengraph URL: https://github.com/biojava/biojava

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UniProt XML module code contributionhttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1112
heuermhhttps://patch-diff.githubusercontent.com/biojava/biojava/issues?q=is%3Aissue%20state%3Aopen%20author%3Aheuermh
Unable to find entrez (e -utilities) NCBIhttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1090
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Quality: Sonar S1155 "Collection.isEmpty()" should be used to test for emptinesshttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1079
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Quality: Sonar RSPEC-1940 "Boolean checks should not be inverted"https://patch-diff.githubusercontent.com/biojava/biojava/issues/1074
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Suggestion: Sonar S2129 Constructors should not be used to instantiate "String", "BigInteger", "BigDecimal" and primitive-wrapper classeshttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1066
jlerbschttps://patch-diff.githubusercontent.com/biojava/biojava/issues?q=is%3Aissue%20state%3Aopen%20author%3Ajlerbsc
Suggestion: Sonar S1130 "throws" declarations should not be superfluoushttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1061
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Test Smell: it is not a good test practice to use the loop in the testhttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1038
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NCBIQBlastService.sendAlignmentRequest | Always throws ArrayIndexOutOfBoundsExceptionhttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1033
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 6.1.0https://github.com/biojava/biojava/milestone/12
o.b.n.core.sequence.CDSSequence doesn't reverse-complement correctlyhttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1016
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Maintenance of ontology modulehttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1013
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Add standard documented way how to reduce structure to a subset of chainshttps://patch-diff.githubusercontent.com/biojava/biojava/issues/1003
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