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Title: BUG - Normalisation/coreg report figures cut off without external monitor · Issue #404 · automaticanalysis/automaticanalysis · GitHub

Open Graph Title: BUG - Normalisation/coreg report figures cut off without external monitor · Issue #404 · automaticanalysis/automaticanalysis

X Title: BUG - Normalisation/coreg report figures cut off without external monitor · Issue #404 · automaticanalysis/automaticanalysis

Description: Describe the bug When running coregistration and normalisation in preprocessing, AA returns a report with FSL style images outlining the registration procedure/results. However, when I run aa on my laptop, these images are cut off and im...

Open Graph Description: Describe the bug When running coregistration and normalisation in preprocessing, AA returns a report with FSL style images outlining the registration procedure/results. However, when I run aa on my...

X Description: Describe the bug When running coregistration and normalisation in preprocessing, AA returns a report with FSL style images outlining the registration procedure/results. However, when I run aa on my...

Opengraph URL: https://github.com/automaticanalysis/automaticanalysis/issues/404

X: @github

direct link

Domain: patch-diff.githubusercontent.com


Hey, it has json ld scripts:
{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"BUG - Normalisation/coreg report figures cut off without external monitor","articleBody":"**Describe the bug**\r\nWhen running coregistration and normalisation in preprocessing, AA returns a report with FSL style images outlining the registration procedure/results. However, when I run aa on my laptop, these images are cut off and impossible to read - see attached images below. \r\n\r\n![image](https://github.com/user-attachments/assets/670990cd-9d0e-41e5-925c-b0b15827bfe8)\r\n![image](https://github.com/user-attachments/assets/0f7d57ed-9a8d-4e8a-8f7f-73a6216af2e1)\r\n\r\n\r\nHowever, when I plug my laptop into an external monitor the output is fine using the same scripts - see image below.\r\n\r\n![image](https://github.com/user-attachments/assets/27515785-871b-4f71-92fa-a151cd33b22c)\r\n\r\nI do not always have access to my monitor, but obviously checking my preprocessing has worked correctly is important. Is there anything I can do to allow this to run correctly on my laptop? I believe this issue lies somewhere in the aa_checkreg_avi script, but I cannot work out how to fix it.\r\n\r\n\r\nMy hardware is:\r\n- Laptop: Macbook Pro 13-inch, 2019\r\n- Monitor: Dell U2410, 1920 X 1200 resolution\r\n\r\n**Environment:**\r\nOS with version: Sonoma 14.6.1\r\nMATLAB version: R2020a\r\nRelevant toolboxes with version: SPM12\r\n","author":{"url":"https://github.com/benjybarnett","@type":"Person","name":"benjybarnett"},"datePublished":"2025-01-08T16:56:29.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":0},"url":"https://github.com/404/automaticanalysis/issues/404"}

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BUG - Normalisation/coreg report figures cut off without external monitorhttps://patch-diff.githubusercontent.com/automaticanalysis/automaticanalysis/issues/404#top
bughttps://github.com/automaticanalysis/automaticanalysis/issues?q=state%3Aopen%20label%3A%22bug%22
https://github.com/benjybarnett
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on Jan 8, 2025https://github.com/automaticanalysis/automaticanalysis/issues/404#issue-2775875699
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