René's URL Explorer Experiment

{"@context":"https://schema.org","@type":"DiscussionForumPosting","headline":"Error on MaCOS","articleBody":"A lab member is running into this error when using aa in MacOS:\r\n\r\n```\r\nMODULE aamod_norm_write RUNNING: SPM normalisation write (stream EPI) for /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01\r\nLoaded datecheck was XjjaG81ajY/DKnn2FLnkUw== and calc XjjaG81ajY/DKnn2FLnkUw==\r\nLoaded datecheck was hvTVm+EkvkvqpY1iv+VvSw== and calc hvTVm+EkvkvqpY1iv+VvSw==\r\nPrevious copying of files did not complete, will recopy\r\n retrieve stream forward_deformation_field [checksum match, not recopied] from /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_segment8_00001/sub-01 to /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01\r\n retrieve stream structural [checksum match, not recopied] from /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_segment8_00001/sub-01 to /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01\r\n retrieving stream epi from /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_coreg_extended_2_epi_00001/sub-01/tactile_run-01 to /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01\r\n***LINUX ERROR FROM SHELL zsh:1: command not found: setenv\r\nln: /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01/rasub-01_ses-01_task-tactile_run-01_bold_001.nii: Operation not supported\r\n\r\n***WHILE RUNNING COMMAND\r\nsetenv TERM dumb;ln -f /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_coreg_extended_2_epi_00001/sub-01/tactile_run-01/rasub-01_ses-01_task-tactile_run-01_bold_001.nii /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01/rasub-01_ses-01_task-tactile_run-01_bold_001.nii\r\n\r\n\r\n**** automatic analysis failed - see reason and line numbers below\r\n***WITH ENVIRONMENT VARIABLES\r\nUSER=elifoymagil\r\nCOMMAND_MODE=unix2003\r\n__CFBundleIdentifier=com.mathworks.matlab\r\nPATH=/usr/bin:/bin:/usr/sbin:/sbin\r\nLOGNAME=elifoymagil\r\nDISPLAY=/private/tmp/com.apple.launchd.SDaBwJTZo9/org.xquartz:0\r\nSSH_AUTH_SOCK=/private/tmp/com.apple.launchd.sR2PUGZgMZ/Listeners\r\nHOME=/Users/elifoymagil\r\nSHELL=/bin/zsh\r\nTMPDIR=/var/folders/r2/xdx1j0697bl2gstgqmnxnv1r0000gn/T/\r\nMATLAB_USE_USERWORK=\r\n__CF_USER_TEXT_ENCODING=0x1F5:0x23:0x18\r\nXPC_SERVICE_NAME=application.com.mathworks.matlab.1654994.1757910\r\nXPC_FLAGS=0x0\r\nLC_NUMERIC=C\r\nLANG=tr_TR.UTF-8\r\nICU_TIMEZONE_FILES_DIR=/Applications/MATLAB_R2022a.app/bin/icutzdata\r\nKMP_HANDLE_SIGNALS=0\r\nMKL_NUM_THREADS=\r\nMKL_DOMAIN_NUM_THREADS=\r\nKMP_BLOCKTIME=1\r\nKMP_STACKSIZE=512k\r\nKMP_INIT_AT_FORK=false\r\nMEMKIND_HEAP_MANAGER=TBB\r\n__KMP_REGISTERED_LIB_1667=0x1150ad1a8-cafe6253-libiomp5.dylib\r\nFSLDIR=/Volumes/ElifSanDisk/fsl\r\nFSLOUTPUTTYPE=NIFTI_GZ\r\nSPMDIR=/Users/elifoymagil/Downloads/spm12\r\nSPM_NUM_THREADS=1\r\nTERM=dumb\r\nSHLVL=0\r\nPWD=/Volumes/ElifOymagil/new_participants_analysis/analysis\r\nOLDPWD=/Volumes/ElifOymagil/new_participants_analysis/analysis\r\n_=/usr/bin/env\r\n\r\nfor help, see the aa wiki\r\nError using aas_log\r\naa error:\r\nsee above (or set aap.options.verbose)\r\n\r\n\r\nError in aas_shell (line 62)\r\n    aas_log([],stopforerrors,sprintf('***WITH ENVIRONMENT VARIABLES\\n%s',wenv));\r\n\r\nError in aas_retrieve_inputs_part2 (line 176)\r\n                                    aas_shell(cmd);\r\n\r\nError in aa_doprocessing_onetask (line 184)\r\n                    aap=aas_retrieve_inputs_part2(aap,streamfiles{inpind});\r\n\r\nError in aaq_localsingle/runall (line 15)\r\n                aa_doprocessing_onetask(obj.aap,job.task,job.k,job.indices);\r\n\r\nError in aa_doprocessing (line 361)\r\n            taskqueue.runall(dontcloseexistingworkers, false);\r\n\r\nError in prep_sample (line 41)\r\naa_doprocessing(aap); % This is where the analysis begins\r\n```","author":{"url":"https://github.com/TamerGezici","@type":"Person","name":"TamerGezici"},"datePublished":"2023-04-25T11:59:59.000Z","interactionStatistic":{"@type":"InteractionCounter","interactionType":"https://schema.org/CommentAction","userInteractionCount":2},"url":"https://github.com/384/automaticanalysis/issues/384"}