René's URL Explorer Experiment


Title: GitHub - alisonmitchell/Biomedical-Knowledge-Graph: Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction.

Open Graph Title: GitHub - alisonmitchell/Biomedical-Knowledge-Graph: Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction.

X Title: GitHub - alisonmitchell/Biomedical-Knowledge-Graph: Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction.

Description: Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction. - alisonmitchell/Biomedical-Knowledge-Graph

Open Graph Description: Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction. - a...

X Description: Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction. - a...

Opengraph URL: https://github.com/alisonmitchell/Biomedical-Knowledge-Graph

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:90ca66a5-e729-74e8-10ac-8ef25291fafd
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9178:2082A:22D14B4:2FD37C8:698CE26A
html-safe-noncedec0ac552af2aa980fa8214243f772f78ac3ab5957d60bf3fa246ad370fcb6fa
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5MTc4OjIwODJBOjIyRDE0QjQ6MkZEMzdDODo2OThDRTI2QSIsInZpc2l0b3JfaWQiOiI1MjMzMTUzODkzNzEwMjI2MDI2IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac92785e76bff8f7babfa45f0e07a3203ec21620522412ec351edb3b4ec8349a5f
hovercard-subject-tagrepository:581782140
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/alisonmitchell/Biomedical-Knowledge-Graph
twitter:imagehttps://repository-images.githubusercontent.com/581782140/780974b3-754f-46d5-a317-d5e79130e490
twitter:cardsummary_large_image
og:imagehttps://repository-images.githubusercontent.com/581782140/780974b3-754f-46d5-a317-d5e79130e490
og:image:altInformation extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction. - a...
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/alisonmitchell/Biomedical-Knowledge-Graph git https://github.com/alisonmitchell/Biomedical-Knowledge-Graph.git
octolytics-dimension-user_id25347481
octolytics-dimension-user_loginalisonmitchell
octolytics-dimension-repository_id581782140
octolytics-dimension-repository_nwoalisonmitchell/Biomedical-Knowledge-Graph
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id581782140
octolytics-dimension-repository_network_root_nwoalisonmitchell/Biomedical-Knowledge-Graph
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Falisonmitchell%2FBiomedical-Knowledge-Graph
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Falisonmitchell%2FBiomedical-Knowledge-Graph
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=alisonmitchell%2FBiomedical-Knowledge-Graph
Reloadhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
Reloadhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
Reloadhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
alisonmitchell https://patch-diff.githubusercontent.com/alisonmitchell
Biomedical-Knowledge-Graphhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Falisonmitchell%2FBiomedical-Knowledge-Graph
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2Falisonmitchell%2FBiomedical-Knowledge-Graph
Star 16 https://patch-diff.githubusercontent.com/login?return_to=%2Falisonmitchell%2FBiomedical-Knowledge-Graph
16 stars https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/stargazers
0 forks https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/forks
Branches https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/branches
Tags https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tags
Activity https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Falisonmitchell%2FBiomedical-Knowledge-Graph
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Falisonmitchell%2FBiomedical-Knowledge-Graph
Code https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
Issues 1 https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/issues
Pull requests 0 https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/pulls
Actions https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/actions
Projects 0 https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/projects
Security 0 https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/security
Insights https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/pulse
Code https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
Issues https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/issues
Pull requests https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/pulls
Actions https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/actions
Projects https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/projects
Security https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/security
Insights https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/pulse
Brancheshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/branches
Tagshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tags
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/branches
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tags
59 Commitshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/commits/main/
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/commits/main/
01_Data_Collectionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/01_Data_Collection
01_Data_Collectionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/01_Data_Collection
02_Exploratory_Data_Analysishttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/02_Exploratory_Data_Analysis
02_Exploratory_Data_Analysishttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/02_Exploratory_Data_Analysis
03_Coreference_Resolutionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/03_Coreference_Resolution
03_Coreference_Resolutionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/03_Coreference_Resolution
04_Named_Entity_Recognitionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/04_Named_Entity_Recognition
04_Named_Entity_Recognitionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/04_Named_Entity_Recognition
05_Relation_Extractionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/05_Relation_Extraction
05_Relation_Extractionhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/05_Relation_Extraction
06_Knowledge_Graphshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/06_Knowledge_Graphs
06_Knowledge_Graphshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/06_Knowledge_Graphs
imageshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/images
imageshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/tree/main/images
.gitignorehttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/.gitignore
README.mdhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/README.md
README.mdhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/README.md
READMEhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#biomedical-knowledge-graph
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#project-description
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#data-collection
Europe PMChttps://europepmc.org/
arXivhttps://arxiv.org/
GROBIDhttps://github.com/kermitt2/grobid
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#exploratory-data-analysis
https://github.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/images/glove_network_explorer_titled.png?raw=true
BERTopichttps://github.com/MaartenGr/BERTopic
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#information-extraction-pipeline
https://github.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/images/information_extraction_pipeline.png?raw=true
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#coreference-resolution
fastcorefhttps://github.com/shon-otmazgin/fastcoref
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#named-entity-recognition
BERN2https://github.com/dmis-lab/BERN2
KAZUhttps://github.com/AstraZeneca/KAZU
https://github.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/images/named_entities_and_labels.png?raw=true
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#relation-extraction
REBELhttps://github.com/Babelscape/rebel
LlamaIndexhttps://github.com/run-llama/llama_index
LangChainhttps://github.com/langchain-ai
Groqhttps://console.groq.com/playground
Unslothhttps://github.com/unslothai/unsloth
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#knowledge-graph
Googlehttps://blog.google/products/search/introducing-knowledge-graph-things-not/
1950shttps://dl.acm.org/doi/pdf/10.1145/3418294
unify LLMs and KGshttps://arxiv.org/pdf/2306.08302
Gartnerhttps://www.gartner.com/en/newsroom/press-releases/2021-03-16-gartner-identifies-top-10-data-and-analytics-technologies-trends-for-2021
composite AIhttps://www.gartner.com/en/articles/hype-cycle-for-artificial-intelligence
NetworkXhttps://github.com/networkx/networkx
Pyvishttps://github.com/WestHealth/pyvis
https://github.com/alisonmitchell/Biomedical-Knowledge-Graph/blob/main/images/pyvis_knowledge_graph_alveolar_type_ii_cells.png?raw=true
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#data-sources
Europe PMChttps://europepmc.org/
arXivhttps://arxiv.org/
https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#python-libraries
arxiv.pyhttps://github.com/lukasschwab/arxiv.py
GROBIDhttps://github.com/kermitt2/grobid
scipdf_parserhttps://github.com/titipata/scipdf_parser
Europe PMC Articles RESTful APIhttps://europepmc.org/RestfulWebService
Beautiful Souphttps://www.crummy.com/software/BeautifulSoup/bs4/doc/
pdfminer.sixhttps://github.com/pdfminer/pdfminer.six
pdfplumberhttps://github.com/jsvine/pdfplumber
spaCyhttps://github.com/explosion/spaCy
scispaCyhttps://github.com/allenai/scispacy
Textstathttps://github.com/textstat/textstat
Plotlyhttps://plotly.com/python/
kneedhttps://github.com/arvkevi/kneed
Yellowbrickhttps://github.com/DistrictDataLabs/yellowbrick
UMAPhttps://github.com/lmcinnes/umap
Gensimhttps://github.com/piskvorky/gensim
embedding-explorerhttps://github.com/centre-for-humanities-computing/embedding-explorer
Embetterhttps://github.com/koaning/embetter
glove-pythonhttps://github.com/maciejkula/glove-python
glovpyhttps://github.com/centre-for-humanities-computing/glovpy
openai-pythonhttps://github.com/openai/openai-python
BERTopichttps://github.com/MaartenGr/BERTopic
fastcorefhttps://github.com/shon-otmazgin/fastcoref
BERN2https://github.com/dmis-lab/BERN2
KAZUhttps://github.com/AstraZeneca/KAZU
REBELhttps://github.com/Babelscape/rebel
Groqhttps://groq.com/
Hugging Facehttps://huggingface.co/docs/transformers/en/index
LlamaIndexhttps://github.com/run-llama/llama_index
LangChainhttps://github.com/langchain-ai
MELODI Prestohttps://melodi-presto.mrcieu.ac.uk/
Unslothhttps://github.com/unslothai/unsloth
NetworkXhttps://github.com/networkx/networkx
Pyvishttps://github.com/WestHealth/pyvis
knowledge-graph https://patch-diff.githubusercontent.com/topics/knowledge-graph
named-entity-recognition https://patch-diff.githubusercontent.com/topics/named-entity-recognition
drug-repurposing https://patch-diff.githubusercontent.com/topics/drug-repurposing
arxiv https://patch-diff.githubusercontent.com/topics/arxiv
biomedical https://patch-diff.githubusercontent.com/topics/biomedical
relation-extraction https://patch-diff.githubusercontent.com/topics/relation-extraction
coreference-resolution https://patch-diff.githubusercontent.com/topics/coreference-resolution
europe-pmc https://patch-diff.githubusercontent.com/topics/europe-pmc
grobid https://patch-diff.githubusercontent.com/topics/grobid
groq https://patch-diff.githubusercontent.com/topics/groq
bertopic https://patch-diff.githubusercontent.com/topics/bertopic
langchain https://patch-diff.githubusercontent.com/topics/langchain
llamaindex https://patch-diff.githubusercontent.com/topics/llamaindex
unsloth https://patch-diff.githubusercontent.com/topics/unsloth
pdfminersix https://patch-diff.githubusercontent.com/topics/pdfminersix
fastcoref https://patch-diff.githubusercontent.com/topics/fastcoref
bern2 https://patch-diff.githubusercontent.com/topics/bern2
kazu https://patch-diff.githubusercontent.com/topics/kazu
melodi-presto https://patch-diff.githubusercontent.com/topics/melodi-presto
spacy-scispacy https://patch-diff.githubusercontent.com/topics/spacy-scispacy
Readme https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
Activityhttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/activity
16 starshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/watchers
0 forkshttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Falisonmitchell%2FBiomedical-Knowledge-Graph&report=alisonmitchell+%28user%29
Please reload this pagehttps://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph
Jupyter Notebook 100.0% https://patch-diff.githubusercontent.com/alisonmitchell/Biomedical-Knowledge-Graph/search?l=jupyter-notebook
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width

URLs of crawlers that visited me.