René's URL Explorer Experiment


Title: GitHub - al2na/methylKit: R package for DNA methylation analysis

Open Graph Title: GitHub - al2na/methylKit: R package for DNA methylation analysis

X Title: GitHub - al2na/methylKit: R package for DNA methylation analysis

Description: R package for DNA methylation analysis. Contribute to al2na/methylKit development by creating an account on GitHub.

Open Graph Description: R package for DNA methylation analysis. Contribute to al2na/methylKit development by creating an account on GitHub.

X Description: R package for DNA methylation analysis. Contribute to al2na/methylKit development by creating an account on GitHub.

Mail addresses
methylkit_discussion@googlegroups.com

Opengraph URL: https://github.com/al2na/methylKit

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:eed3e678-2ddf-41f2-0067-80aa0d4e6331
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id9ACE:71F02:109E7DB:1702C73:698CB874
html-safe-noncec225c01ed75527232845b7fd960ce5d03e3b62097ef039d9d41defedd0f30ae7
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI5QUNFOjcxRjAyOjEwOUU3REI6MTcwMkM3Mzo2OThDQjg3NCIsInZpc2l0b3JfaWQiOiI0MjUxODM1NTc4MzI3MDIxNjg0IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmac013795a0e70e92c3c9ec509a11a9dfcc54989120263e9da596e6683a71165b6d
hovercard-subject-tagrepository:15424141
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/al2na/methylKit
twitter:imagehttps://opengraph.githubassets.com/ae05b7adc10ec1974a2ba7bc00b87bdc81e497dad22a099c928a89f6ad37a550/al2na/methylKit
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/ae05b7adc10ec1974a2ba7bc00b87bdc81e497dad22a099c928a89f6ad37a550/al2na/methylKit
og:image:altR package for DNA methylation analysis. Contribute to al2na/methylKit development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/al2na/methylKit git https://github.com/al2na/methylKit.git
octolytics-dimension-user_id638225
octolytics-dimension-user_loginal2na
octolytics-dimension-repository_id15424141
octolytics-dimension-repository_nwoal2na/methylKit
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id15424141
octolytics-dimension-repository_network_root_nwoal2na/methylKit
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetcanary-2
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/al2na/methylKit#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fal2na%2FmethylKit
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fal2na%2FmethylKit
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=al2na%2FmethylKit
Reloadhttps://patch-diff.githubusercontent.com/al2na/methylKit
Reloadhttps://patch-diff.githubusercontent.com/al2na/methylKit
Reloadhttps://patch-diff.githubusercontent.com/al2na/methylKit
al2na https://patch-diff.githubusercontent.com/al2na
methylKithttps://patch-diff.githubusercontent.com/al2na/methylKit
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fal2na%2FmethylKit
Fork 101 https://patch-diff.githubusercontent.com/login?return_to=%2Fal2na%2FmethylKit
Star 247 https://patch-diff.githubusercontent.com/login?return_to=%2Fal2na%2FmethylKit
bioconductor.org/packages/release/bioc/html/methylKit.htmlhttps://bioconductor.org/packages/release/bioc/html/methylKit.html
247 stars https://patch-diff.githubusercontent.com/al2na/methylKit/stargazers
101 forks https://patch-diff.githubusercontent.com/al2na/methylKit/forks
Branches https://patch-diff.githubusercontent.com/al2na/methylKit/branches
Tags https://patch-diff.githubusercontent.com/al2na/methylKit/tags
Activity https://patch-diff.githubusercontent.com/al2na/methylKit/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fal2na%2FmethylKit
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fal2na%2FmethylKit
Code https://patch-diff.githubusercontent.com/al2na/methylKit
Issues 62 https://patch-diff.githubusercontent.com/al2na/methylKit/issues
Pull requests 8 https://patch-diff.githubusercontent.com/al2na/methylKit/pulls
Actions https://patch-diff.githubusercontent.com/al2na/methylKit/actions
Projects 3 https://patch-diff.githubusercontent.com/al2na/methylKit/projects
Wiki https://patch-diff.githubusercontent.com/al2na/methylKit/wiki
Security 0 https://patch-diff.githubusercontent.com/al2na/methylKit/security
Insights https://patch-diff.githubusercontent.com/al2na/methylKit/pulse
Code https://patch-diff.githubusercontent.com/al2na/methylKit
Issues https://patch-diff.githubusercontent.com/al2na/methylKit/issues
Pull requests https://patch-diff.githubusercontent.com/al2na/methylKit/pulls
Actions https://patch-diff.githubusercontent.com/al2na/methylKit/actions
Projects https://patch-diff.githubusercontent.com/al2na/methylKit/projects
Wiki https://patch-diff.githubusercontent.com/al2na/methylKit/wiki
Security https://patch-diff.githubusercontent.com/al2na/methylKit/security
Insights https://patch-diff.githubusercontent.com/al2na/methylKit/pulse
Brancheshttps://patch-diff.githubusercontent.com/al2na/methylKit/branches
Tagshttps://patch-diff.githubusercontent.com/al2na/methylKit/tags
https://patch-diff.githubusercontent.com/al2na/methylKit/branches
https://patch-diff.githubusercontent.com/al2na/methylKit/tags
1,078 Commitshttps://patch-diff.githubusercontent.com/al2na/methylKit/commits/master/
https://patch-diff.githubusercontent.com/al2na/methylKit/commits/master/
.githubhttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/.github
.githubhttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/.github
Rhttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/R
Rhttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/R
datahttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/data
datahttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/data
insthttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/inst
insthttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/inst
manhttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/man
manhttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/man
srchttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/src
srchttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/src
testshttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/tests
testshttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/tests
vignetteshttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/vignettes
vignetteshttps://patch-diff.githubusercontent.com/al2na/methylKit/tree/master/vignettes
.Rbuildignorehttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.Rbuildignore
.Rbuildignorehttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.Rbuildignore
.Rinstignorehttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.Rinstignore
.Rinstignorehttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.Rinstignore
.gitignorehttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.gitignore
.travis.ymlhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.travis.yml
.travis.ymlhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/.travis.yml
DESCRIPTIONhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/DESCRIPTION
DESCRIPTIONhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/DESCRIPTION
NAMESPACEhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/NAMESPACE
NAMESPACEhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/NAMESPACE
NEWShttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/NEWS
NEWShttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/NEWS
README.mdhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/al2na/methylKit/blob/master/README.md
READMEhttps://patch-diff.githubusercontent.com/al2na/methylKit
https://raw.githubusercontent.com/al2na/methylKit/master/inst/methylKit_logo.png
https://patch-diff.githubusercontent.com/al2na/methylKit#methylkit
https://github.com/al2na/methylKit/actions/workflows/check-standard.yaml
https://bioconductor.org/checkResults/release/bioc-LATEST/methylKit
https://bioconductor.org/checkResults/devel/bioc-LATEST/methylKit
https://github.com/al2na/methylKit/blob/master/NEWS
https://codecov.io/github/al2na/methylKit
https://patch-diff.githubusercontent.com/al2na/methylKit#introduction
Rhttp://en.wikipedia.org/wiki/R_%28programming_language%29
RRBShttp://www.nature.com/nprot/journal/v6/n4/abs/nprot.2010.190.html
Agilent SureSelect methyl-seqhttp://www.halogenomics.com/sureselect/methyl-seq
https://patch-diff.githubusercontent.com/al2na/methylKit#current-features
documentationhttps://bioconductor.org/packages/release/bioc/vignettes/methylKit/inst/doc/methylKit.html
Bismark(Bowtie/Bowtie2http://www.bioinformatics.bbsrc.ac.uk/projects/bismark/
https://patch-diff.githubusercontent.com/al2na/methylKit#staying-up-to-date
https://groups.google.com/forum/#!forum/methylkithttps://groups.google.com/forum/#!forum/methylkit
https://groups.google.com/forum/#!forum/methylkit_discussionhttps://groups.google.com/forum/#!forum/methylkit_discussion
http://zvfak.blogspot.de/search/label/methylKithttp://zvfak.blogspot.de/search/label/methylKit
https://patch-diff.githubusercontent.com/al2na/methylKit#installation
https://patch-diff.githubusercontent.com/al2na/methylKit#install-the-development-version
https://patch-diff.githubusercontent.com/al2na/methylKit#how-to-use
AMP pipelinehttp://code.google.com/p/amp-errbs/
BSMAPhttp://code.google.com/p/bsmap/
herehttp://zvfak.blogspot.com/2012/10/how-to-read-bsmap-methylation-ratio.html
Bismarkhttp://www.bioinformatics.bbsrc.ac.uk/projects/bismark/
https://patch-diff.githubusercontent.com/al2na/methylKit#documentation
herehttps://bioconductor.org/packages/release/bioc/vignettes/methylKit/inst/doc/methylKit.html
slideshttps://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/methylkit/methylKitTutorialSlides_2013.pdf
tutorialhttps://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/methylkit/methylKitTutorial_feb2012.pdf
slideshttps://www.slideshare.net/AlexanderGosdschan/eurobioc-2018-metyhlkit-overview
https://patch-diff.githubusercontent.com/al2na/methylKit#downloading-annotation-files
http://genome.ucsc.edu/cgi-bin/hgGatewayhttp://genome.ucsc.edu/cgi-bin/hgGateway
http://www.openhelix.com/cgi/tutorialInfo.cgi?id=28http://www.openhelix.com/cgi/tutorialInfo.cgi?id=28
https://patch-diff.githubusercontent.com/al2na/methylKit#r-script-for-genome-biology-publication
herehttp://code.google.com/p/methylkit/downloads/list?q=label:AdditionalFile4
https://patch-diff.githubusercontent.com/al2na/methylKit#citing-methylkit
methylKit: A comprehensive R package for the analysis of genome-wide DNA methylation profiles.http://genomebiology.com/2012/13/10/R87/
Strategies for analyzing bisulfite sequencing data.https://linkinghub.elsevier.com/retrieve/pii/S0168-1656(17)31593-6
Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia.http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002781
https://patch-diff.githubusercontent.com/al2na/methylKit#contact--questions
the web interfacehttps://groups.google.com/forum/#!forum/methylkit_discussion
blog entrieshttp://zvfak.blogspot.com/search/label/methylKit
https://patch-diff.githubusercontent.com/al2na/methylKit#contribute-to-the-development
trello boardhttps://trello.com/b/k2kv1Od7/methylkit
http://github.com/al2na/methylKit/http://github.com/al2na/methylKit/
https://patch-diff.githubusercontent.com/al2na/methylKit#license
bioconductor.org/packages/release/bioc/html/methylKit.htmlhttps://bioconductor.org/packages/release/bioc/html/methylKit.html
visualization https://patch-diff.githubusercontent.com/topics/visualization
methylation https://patch-diff.githubusercontent.com/topics/methylation
statistical-analysis https://patch-diff.githubusercontent.com/topics/statistical-analysis
genome-biology https://patch-diff.githubusercontent.com/topics/genome-biology
Readme https://patch-diff.githubusercontent.com/al2na/methylKit#readme-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/al2na/methylKit
Activityhttps://patch-diff.githubusercontent.com/al2na/methylKit/activity
247 starshttps://patch-diff.githubusercontent.com/al2na/methylKit/stargazers
17 watchinghttps://patch-diff.githubusercontent.com/al2na/methylKit/watchers
101 forkshttps://patch-diff.githubusercontent.com/al2na/methylKit/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fal2na%2FmethylKit&report=al2na+%28user%29
Releases 3https://patch-diff.githubusercontent.com/al2na/methylKit/releases
v0.99.2 Latest Jun 20, 2016 https://patch-diff.githubusercontent.com/al2na/methylKit/releases/tag/v0.99.2
+ 2 releaseshttps://patch-diff.githubusercontent.com/al2na/methylKit/releases
Packages 0https://patch-diff.githubusercontent.com/users/al2na/packages?repo_name=methylKit
Please reload this pagehttps://patch-diff.githubusercontent.com/al2na/methylKit
Contributors 13https://patch-diff.githubusercontent.com/al2na/methylKit/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/al2na/methylKit
R 89.9% https://patch-diff.githubusercontent.com/al2na/methylKit/search?l=r
C++ 8.8% https://patch-diff.githubusercontent.com/al2na/methylKit/search?l=c%2B%2B
TeX 1.3% https://patch-diff.githubusercontent.com/al2na/methylKit/search?l=tex
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.