René's URL Explorer Experiment


Title: GitHub - ak422/DDAffinity

Open Graph Title: GitHub - ak422/DDAffinity

X Title: GitHub - ak422/DDAffinity

Description: Contribute to ak422/DDAffinity development by creating an account on GitHub.

Open Graph Description: Contribute to ak422/DDAffinity development by creating an account on GitHub.

X Description: Contribute to ak422/DDAffinity development by creating an account on GitHub.

Opengraph URL: https://github.com/ak422/DDAffinity

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:32eca004-9823-9528-6cd8-8efc5609d4b2
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-id84D8:1F1FAC:D36614:10E7E69:697E6954
html-safe-noncea4829ba2566853ff808286c0d24dd453f032f80c4a77777c8042623dd6fae3f9
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiI4NEQ4OjFGMUZBQzpEMzY2MTQ6MTBFN0U2OTo2OTdFNjk1NCIsInZpc2l0b3JfaWQiOiI2NjE1NjI3MTg4MjQwNTQyMDM2IiwicmVnaW9uX2VkZ2UiOiJpYWQiLCJyZWdpb25fcmVuZGVyIjoiaWFkIn0=
visitor-hmacd2f9f2d77e6b80cbe242dcaa679055f601ee000687661abb53525522dcc27890
hovercard-subject-tagrepository:746096694
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/ak422/DDAffinity
twitter:imagehttps://opengraph.githubassets.com/20b98d50dac7c33f71cf14807211bf7bc9e88dabe382043abb36256f9eb047be/ak422/DDAffinity
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/20b98d50dac7c33f71cf14807211bf7bc9e88dabe382043abb36256f9eb047be/ak422/DDAffinity
og:image:altContribute to ak422/DDAffinity development by creating an account on GitHub.
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None60279d4097367e16897439d16d6bbe4180663db828c666eeed2656988ffe59f6
turbo-cache-controlno-preview
go-importgithub.com/ak422/DDAffinity git https://github.com/ak422/DDAffinity.git
octolytics-dimension-user_id16727746
octolytics-dimension-user_loginak422
octolytics-dimension-repository_id746096694
octolytics-dimension-repository_nwoak422/DDAffinity
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id746096694
octolytics-dimension-repository_network_root_nwoak422/DDAffinity
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release7c85641c598ad130c74f7bcc27f58575cac69551
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/ak422/DDAffinity#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fak422%2FDDAffinity
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2Fak422%2FDDAffinity
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=ak422%2FDDAffinity
Reloadhttps://patch-diff.githubusercontent.com/ak422/DDAffinity
Reloadhttps://patch-diff.githubusercontent.com/ak422/DDAffinity
Reloadhttps://patch-diff.githubusercontent.com/ak422/DDAffinity
ak422 https://patch-diff.githubusercontent.com/ak422
DDAffinityhttps://patch-diff.githubusercontent.com/ak422/DDAffinity
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fak422%2FDDAffinity
Fork 4 https://patch-diff.githubusercontent.com/login?return_to=%2Fak422%2FDDAffinity
Star 24 https://patch-diff.githubusercontent.com/login?return_to=%2Fak422%2FDDAffinity
Apache-2.0 license https://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/LICENSE
24 stars https://patch-diff.githubusercontent.com/ak422/DDAffinity/stargazers
4 forks https://patch-diff.githubusercontent.com/ak422/DDAffinity/forks
Branches https://patch-diff.githubusercontent.com/ak422/DDAffinity/branches
Tags https://patch-diff.githubusercontent.com/ak422/DDAffinity/tags
Activity https://patch-diff.githubusercontent.com/ak422/DDAffinity/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2Fak422%2FDDAffinity
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2Fak422%2FDDAffinity
Code https://patch-diff.githubusercontent.com/ak422/DDAffinity
Issues 7 https://patch-diff.githubusercontent.com/ak422/DDAffinity/issues
Pull requests 0 https://patch-diff.githubusercontent.com/ak422/DDAffinity/pulls
Actions https://patch-diff.githubusercontent.com/ak422/DDAffinity/actions
Projects 0 https://patch-diff.githubusercontent.com/ak422/DDAffinity/projects
Security 0 https://patch-diff.githubusercontent.com/ak422/DDAffinity/security
Insights https://patch-diff.githubusercontent.com/ak422/DDAffinity/pulse
Code https://patch-diff.githubusercontent.com/ak422/DDAffinity
Issues https://patch-diff.githubusercontent.com/ak422/DDAffinity/issues
Pull requests https://patch-diff.githubusercontent.com/ak422/DDAffinity/pulls
Actions https://patch-diff.githubusercontent.com/ak422/DDAffinity/actions
Projects https://patch-diff.githubusercontent.com/ak422/DDAffinity/projects
Security https://patch-diff.githubusercontent.com/ak422/DDAffinity/security
Insights https://patch-diff.githubusercontent.com/ak422/DDAffinity/pulse
Brancheshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/branches
Tagshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tags
https://patch-diff.githubusercontent.com/ak422/DDAffinity/branches
https://patch-diff.githubusercontent.com/ak422/DDAffinity/tags
51 Commitshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/commits/master/
https://patch-diff.githubusercontent.com/ak422/DDAffinity/commits/master/
assetshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/assets
assetshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/assets
configshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/configs
configshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/configs
datahttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/data
datahttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/data
rdehttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/rde
rdehttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/rde
trained_modelshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/trained_models
trained_modelshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/tree/master/trained_models
.gitattributeshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/.gitattributes
.gitattributeshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/.gitattributes
.gitignorehttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/.gitignore
LICENSEhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/README.md
case_study.pyhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/case_study.py
case_study.pyhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/case_study.py
env.ymlhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/env.yml
env.ymlhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/env.yml
test_DDAffinity.pyhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/test_DDAffinity.py
test_DDAffinity.pyhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/test_DDAffinity.py
train_DDAffinity.pyhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/train_DDAffinity.py
train_DDAffinity.pyhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/train_DDAffinity.py
READMEhttps://patch-diff.githubusercontent.com/ak422/DDAffinity
Apache-2.0 licensehttps://patch-diff.githubusercontent.com/ak422/DDAffinity
https://patch-diff.githubusercontent.com/ak422/DDAffinity#ddaffinity-network
https://patch-diff.githubusercontent.com/ak422/DDAffinity#description
Predicting the changes in binding affinity of multiple point mutations using protein three-dimensional structurehttps://github.com/ak422/DDAffinity
ProteinMPNNhttps://www.science.org/doi/10.1126/science.add2187
FoldX 5.0https://foldxsuite.crg.eu/
ProteinMPNNhttps://www.science.org/doi/10.1126/science.add2187
https://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/assets/cover.png
https://patch-diff.githubusercontent.com/ak422/DDAffinity#contact
githubhttps://github.com/ak422/CATH-ddG
https://patch-diff.githubusercontent.com/ak422/DDAffinity#install
https://patch-diff.githubusercontent.com/ak422/DDAffinity#ddaffinity-environment
env.ymlhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/env.yml
https://patch-diff.githubusercontent.com/ak422/DDAffinity#preparation-of-processed-dataset
data/SKEMPI2/PDBshttps://drive.google.com/file/d/1SQTxpGr3P9hFhzmPCGIlAf0ggBSVoDVi/view?usp=drive_link
data/SKEMPI2/SKEMPI2.csvhttps://drive.google.com/file/d/15KHjAh_wIcoEbEmS5AHslewJHArgBvIc/view?usp=drive_link
FoldXhttps://foldxsuite.crg.eu/
SKEMPI2_cachehttps://drive.google.com/file/d/1p2ky9I8CwbCErGF0fw9jrAvrFkV95ZMe/view?usp=drive_link
https://patch-diff.githubusercontent.com/ak422/DDAffinity#datasets
SKEMPI v2https://life.bsc.es/pid/skempi2
data/get_skempi_v2.shhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/blob/master/data/get_skempi_v2.sh
data/SKEMPI2/SKEMPI2_cachehttps://drive.google.com/file/d/1p2ky9I8CwbCErGF0fw9jrAvrFkV95ZMe/view?usp=drive_link
SKEMPI2.csvhttps://drive.google.com/file/d/15KHjAh_wIcoEbEmS5AHslewJHArgBvIc/view?usp=drive_link
SKEMPI2_cachehttps://drive.google.com/file/d/1p2ky9I8CwbCErGF0fw9jrAvrFkV95ZMe/view?usp=drive_link
M1707.csvhttps://drive.google.com/file/d/1JdXZ_DaYC0AusU6gpgQu0KWc-7W4ilf6/view?usp=drive_link
S1131.csvhttps://drive.google.com/file/d/1yq8C2MVVBa51Zh1icwsM2cPWAE_Z_m9C/view?usp=drive_link
M1340.csvhttps://drive.google.com/file/d/1dX_RUbxNg5NEp1QzEF7-YAqGn-vHiwJv/view?usp=drive_link
M595.csvhttps://drive.google.com/file/d/1RarKcz3eya0gSHUX3C4xPtzLYnu3jbBH/view?usp=drive_link
S494.csvhttps://drive.google.com/file/d/1DiFiYAoWZNP-x9YxfleBpa7WfUladeuY/view?usp=drive_link
S285.csvhttps://drive.google.com/file/d/1BqHuKV35ybQZxO_PXzlwYlJhQcwZZGdv/view?usp=drive_link
S285_cachehttps://drive.google.com/file/d/1-ia2Qpy3VbOSbi6Ay5wQAjvVAgnkrXJk/view?usp=sharing
Ssys.csvhttps://drive.google.com/file/d/1_am6EKjYZjLXNcST-GmmYnPix2aX-DHf/view?usp=drive_link
https://patch-diff.githubusercontent.com/ak422/DDAffinity#trained-weights
DDAffinityhttps://drive.google.com/file/d/1tXCWe9M-vhporNHK04Lz-Gv479_nyoNL/view?usp=drive_link
M1340https://drive.google.com/file/d/1UqcISgSUELdvoklX-UmDmvBA9RuDi5Mg/view?usp=drive_link
https://patch-diff.githubusercontent.com/ak422/DDAffinity#usage
https://patch-diff.githubusercontent.com/ak422/DDAffinity#evaluate-ddaffinity
https://patch-diff.githubusercontent.com/ak422/DDAffinity#blind-testing-non-redundant-blind-testing-on-the-multiple-point-mutation-dataset-m595
https://patch-diff.githubusercontent.com/ak422/DDAffinity#case-study-1-predict-mutation-effects-for-sars-cov-2-rbd
https://patch-diff.githubusercontent.com/ak422/DDAffinity#case-study-2-human-antibody-optimization
https://patch-diff.githubusercontent.com/ak422/DDAffinity#train-ddaffinity
https://patch-diff.githubusercontent.com/ak422/DDAffinity#acknowledgements
Rotamer Density Estimator (RDE)https://github.com/luost26/RDE-PPI
Readme https://patch-diff.githubusercontent.com/ak422/DDAffinity#readme-ov-file
Apache-2.0 license https://patch-diff.githubusercontent.com/ak422/DDAffinity#Apache-2.0-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/ak422/DDAffinity
Activityhttps://patch-diff.githubusercontent.com/ak422/DDAffinity/activity
24 starshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/stargazers
3 watchinghttps://patch-diff.githubusercontent.com/ak422/DDAffinity/watchers
4 forkshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2Fak422%2FDDAffinity&report=ak422+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/ak422/DDAffinity/releases
Packages 0https://patch-diff.githubusercontent.com/users/ak422/packages?repo_name=DDAffinity
Python 99.9% https://patch-diff.githubusercontent.com/ak422/DDAffinity/search?l=python
Shell 0.1% https://patch-diff.githubusercontent.com/ak422/DDAffinity/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.