René's URL Explorer Experiment


Title: GitHub - Wu-Lab/SCARP: Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis

Open Graph Title: GitHub - Wu-Lab/SCARP: Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis

X Title: GitHub - Wu-Lab/SCARP: Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis

Description: Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis - Wu-Lab/SCARP

Open Graph Description: Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis - Wu-Lab/SCARP

X Description: Incorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis - Wu-Lab/SCARP

Mail addresses
yujiating@amss.ac.cn
lywu@amss.ac.cn

Opengraph URL: https://github.com/Wu-Lab/SCARP

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:fcc6d689-3c4c-1bf8-82da-d2c7b4aa4392
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idC33C:B6451:3D7821:51E02D:698ED0B4
html-safe-nonce95ceb8740c3aca3a52c88336d204b876e98a2707b04c31590a4b73a8adc8ce8b
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJDMzNDOkI2NDUxOjNENzgyMTo1MUUwMkQ6Njk4RUQwQjQiLCJ2aXNpdG9yX2lkIjoiMjA3NDgzNzU5Nzk2ODg0NzAyOCIsInJlZ2lvbl9lZGdlIjoiaWFkIiwicmVnaW9uX3JlbmRlciI6ImlhZCJ9
visitor-hmac2632863b643e314dcb94b6d9cc2703f42756b046fa5f5454110c191a736d2f80
hovercard-subject-tagrepository:713184601
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/Wu-Lab/SCARP
twitter:imagehttps://opengraph.githubassets.com/8bf565dd0064ee3b07dd79d43408614c86a4f75b2d8423ddf22c0879c61e5b3a/Wu-Lab/SCARP
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/8bf565dd0064ee3b07dd79d43408614c86a4f75b2d8423ddf22c0879c61e5b3a/Wu-Lab/SCARP
og:image:altIncorporating network diffusion and peak location information for better single-cell ATAC-seq data analysis - Wu-Lab/SCARP
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
Nonecb2828a801ee6b7be618f3ac76fbf55def35bbc30f053a9c41bf90210b8b72ba
turbo-cache-controlno-preview
go-importgithub.com/Wu-Lab/SCARP git https://github.com/Wu-Lab/SCARP.git
octolytics-dimension-user_id20130112
octolytics-dimension-user_loginWu-Lab
octolytics-dimension-repository_id713184601
octolytics-dimension-repository_nwoWu-Lab/SCARP
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id713184601
octolytics-dimension-repository_network_root_nwoWu-Lab/SCARP
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
releasee6b91a7e6e46287d26887e3fb7a4161657bab8f7
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FWu-Lab%2FSCARP
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FWu-Lab%2FSCARP
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=Wu-Lab%2FSCARP
Reloadhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
Reloadhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
Reloadhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
Wu-Lab https://patch-diff.githubusercontent.com/Wu-Lab
SCARPhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FWu-Lab%2FSCARP
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FWu-Lab%2FSCARP
Star 2 https://patch-diff.githubusercontent.com/login?return_to=%2FWu-Lab%2FSCARP
MIT license https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/blob/master/LICENSE
2 stars https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/stargazers
0 forks https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/forks
Branches https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/branches
Tags https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tags
Activity https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FWu-Lab%2FSCARP
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FWu-Lab%2FSCARP
Code https://patch-diff.githubusercontent.com/Wu-Lab/SCARP
Issues 0 https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/issues
Pull requests 0 https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/pulls
Actions https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/actions
Projects 0 https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/projects
Security 0 https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/security
Insights https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/pulse
Code https://patch-diff.githubusercontent.com/Wu-Lab/SCARP
Issues https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/issues
Pull requests https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/pulls
Actions https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/actions
Projects https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/projects
Security https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/security
Insights https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/pulse
Brancheshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/branches
Tagshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tags
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/branches
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tags
11 Commitshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/commits/master/
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/commits/master/
Example_datahttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/Example_data
Example_datahttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/Example_data
Vignetteshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/Vignettes
Vignetteshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/Vignettes
imageshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/images
imageshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/images
scarphttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/scarp
scarphttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/tree/master/scarp
LICENSEhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/blob/master/README.md
setup.pyhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/blob/master/setup.py
setup.pyhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/blob/master/setup.py
READMEhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
MIT licensehttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#scarp-method-for-scatac-seq-data-analysis
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#authors
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#pipeline
https://github.com/Wu-Lab/SCARP/
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#installation
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#dependencies
scanpyhttps://scanpy.org/
numpyhttps://numpy.org/
scipyhttps://www.scipy.org/
pandashttps://pandas.pydata.org/
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#usage
herehttps://github.com/Wu-Lab/SCARP/blob/master/Vignettes/Example.ipynb
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#1-preparing-your-scatac-seq-data-in-h5ad-format
herehttps://github.com/Wu-Lab/SCARP/tree/master/Example_data/
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#2-running-scarp-easily-in-one-step
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#parameter-descriptions
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#3-or-you-can-run-scarp-step-by-step
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#1-obtaining-the-nr-diffused-matrix
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#2-computing-the-retained-dimension
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#3-dimensional-reduction
https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#reproduce-results
herehttps://github.com/Wu-Lab/SCARP-reproduce
Readme https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/Wu-Lab/SCARP#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
Activityhttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/activity
Custom propertieshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/custom-properties
2 starshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/stargazers
1 watchinghttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/watchers
0 forkshttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FWu-Lab%2FSCARP&report=Wu-Lab+%28user%29
Releases 1https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/releases
scarp v1.0.0 Latest Dec 20, 2023 https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/releases/tag/V1.0.0
Packages 0https://patch-diff.githubusercontent.com/orgs/Wu-Lab/packages?repo_name=SCARP
Please reload this pagehttps://patch-diff.githubusercontent.com/Wu-Lab/SCARP
HTML 71.8% https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/search?l=html
Jupyter Notebook 23.8% https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/search?l=jupyter-notebook
Python 4.4% https://patch-diff.githubusercontent.com/Wu-Lab/SCARP/search?l=python
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.