René's URL Explorer Experiment


Title: GitHub - WormLabCaltech/alaska: Automated and friendly RNA-seq analysis (deprecated)

Open Graph Title: GitHub - WormLabCaltech/alaska: Automated and friendly RNA-seq analysis (deprecated)

X Title: GitHub - WormLabCaltech/alaska: Automated and friendly RNA-seq analysis (deprecated)

Description: Automated and friendly RNA-seq analysis (deprecated) - WormLabCaltech/alaska

Open Graph Description: Automated and friendly RNA-seq analysis (deprecated) - WormLabCaltech/alaska

X Description: Automated and friendly RNA-seq analysis (deprecated) - WormLabCaltech/alaska

Opengraph URL: https://github.com/WormLabCaltech/alaska

X: @github

direct link

Domain: patch-diff.githubusercontent.com

route-pattern/:user_id/:repository
route-controllerfiles
route-actiondisambiguate
fetch-noncev2:ca04c5ca-1558-e238-f34f-971efc00c9df
current-catalog-service-hashf3abb0cc802f3d7b95fc8762b94bdcb13bf39634c40c357301c4aa1d67a256fb
request-idB92C:302CF5:112918:165100:698C317A
html-safe-nonceede3c4e140338069d7545b5dea37280f9ad8afbfe7bb47ee1800d3ca8ddeceee
visitor-payloadeyJyZWZlcnJlciI6IiIsInJlcXVlc3RfaWQiOiJCOTJDOjMwMkNGNToxMTI5MTg6MTY1MTAwOjY5OEMzMTdBIiwidmlzaXRvcl9pZCI6IjU5MzMyNTc2NzkxOTk1NDc3NzEiLCJyZWdpb25fZWRnZSI6ImlhZCIsInJlZ2lvbl9yZW5kZXIiOiJpYWQifQ==
visitor-hmacd7a8af15ae232b91486bcc7ba6fd5edc3f52585bf416fd945fafd1212ec2ddce
hovercard-subject-tagrepository:87482987
github-keyboard-shortcutsrepository,copilot
google-site-verificationApib7-x98H0j5cPqHWwSMm6dNU4GmODRoqxLiDzdx9I
octolytics-urlhttps://collector.github.com/github/collect
analytics-location//
fb:app_id1401488693436528
apple-itunes-appapp-id=1477376905, app-argument=https://github.com/WormLabCaltech/alaska
twitter:imagehttps://opengraph.githubassets.com/53a2db332b07441e4f65615adaf4a771ff44896a2a68c7e17b74366faddd9e28/WormLabCaltech/alaska
twitter:cardsummary_large_image
og:imagehttps://opengraph.githubassets.com/53a2db332b07441e4f65615adaf4a771ff44896a2a68c7e17b74366faddd9e28/WormLabCaltech/alaska
og:image:altAutomated and friendly RNA-seq analysis (deprecated) - WormLabCaltech/alaska
og:image:width1200
og:image:height600
og:site_nameGitHub
og:typeobject
hostnamegithub.com
expected-hostnamegithub.com
None640eeb7b6ff4d8d106235d228c0c286e82592d4d2403227b5b2b4fc5832297a4
turbo-cache-controlno-preview
go-importgithub.com/WormLabCaltech/alaska git https://github.com/WormLabCaltech/alaska.git
octolytics-dimension-user_id19173499
octolytics-dimension-user_loginWormLabCaltech
octolytics-dimension-repository_id87482987
octolytics-dimension-repository_nwoWormLabCaltech/alaska
octolytics-dimension-repository_publictrue
octolytics-dimension-repository_is_forkfalse
octolytics-dimension-repository_network_root_id87482987
octolytics-dimension-repository_network_root_nwoWormLabCaltech/alaska
turbo-body-classeslogged-out env-production page-responsive
disable-turbofalse
browser-stats-urlhttps://api.github.com/_private/browser/stats
browser-errors-urlhttps://api.github.com/_private/browser/errors
release3d444f0a47beeeac94cddbb51c91ab408befe8d4
ui-targetfull
theme-color#1e2327
color-schemelight dark

Links:

Skip to contenthttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska#start-of-content
https://patch-diff.githubusercontent.com/
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FWormLabCaltech%2Falaska
GitHub CopilotWrite better code with AIhttps://github.com/features/copilot
GitHub SparkBuild and deploy intelligent appshttps://github.com/features/spark
GitHub ModelsManage and compare promptshttps://github.com/features/models
MCP RegistryNewIntegrate external toolshttps://github.com/mcp
ActionsAutomate any workflowhttps://github.com/features/actions
CodespacesInstant dev environmentshttps://github.com/features/codespaces
IssuesPlan and track workhttps://github.com/features/issues
Code ReviewManage code changeshttps://github.com/features/code-review
GitHub Advanced SecurityFind and fix vulnerabilitieshttps://github.com/security/advanced-security
Code securitySecure your code as you buildhttps://github.com/security/advanced-security/code-security
Secret protectionStop leaks before they starthttps://github.com/security/advanced-security/secret-protection
Why GitHubhttps://github.com/why-github
Documentationhttps://docs.github.com
Bloghttps://github.blog
Changeloghttps://github.blog/changelog
Marketplacehttps://github.com/marketplace
View all featureshttps://github.com/features
Enterpriseshttps://github.com/enterprise
Small and medium teamshttps://github.com/team
Startupshttps://github.com/enterprise/startups
Nonprofitshttps://github.com/solutions/industry/nonprofits
App Modernizationhttps://github.com/solutions/use-case/app-modernization
DevSecOpshttps://github.com/solutions/use-case/devsecops
DevOpshttps://github.com/solutions/use-case/devops
CI/CDhttps://github.com/solutions/use-case/ci-cd
View all use caseshttps://github.com/solutions/use-case
Healthcarehttps://github.com/solutions/industry/healthcare
Financial serviceshttps://github.com/solutions/industry/financial-services
Manufacturinghttps://github.com/solutions/industry/manufacturing
Governmenthttps://github.com/solutions/industry/government
View all industrieshttps://github.com/solutions/industry
View all solutionshttps://github.com/solutions
AIhttps://github.com/resources/articles?topic=ai
Software Developmenthttps://github.com/resources/articles?topic=software-development
DevOpshttps://github.com/resources/articles?topic=devops
Securityhttps://github.com/resources/articles?topic=security
View all topicshttps://github.com/resources/articles
Customer storieshttps://github.com/customer-stories
Events & webinarshttps://github.com/resources/events
Ebooks & reportshttps://github.com/resources/whitepapers
Business insightshttps://github.com/solutions/executive-insights
GitHub Skillshttps://skills.github.com
Documentationhttps://docs.github.com
Customer supporthttps://support.github.com
Community forumhttps://github.com/orgs/community/discussions
Trust centerhttps://github.com/trust-center
Partnershttps://github.com/partners
GitHub SponsorsFund open source developershttps://github.com/sponsors
Security Labhttps://securitylab.github.com
Maintainer Communityhttps://maintainers.github.com
Acceleratorhttps://github.com/accelerator
Archive Programhttps://archiveprogram.github.com
Topicshttps://github.com/topics
Trendinghttps://github.com/trending
Collectionshttps://github.com/collections
Enterprise platformAI-powered developer platformhttps://github.com/enterprise
GitHub Advanced SecurityEnterprise-grade security featureshttps://github.com/security/advanced-security
Copilot for BusinessEnterprise-grade AI featureshttps://github.com/features/copilot/copilot-business
Premium SupportEnterprise-grade 24/7 supporthttps://github.com/premium-support
Pricinghttps://github.com/pricing
Search syntax tipshttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
documentationhttps://docs.github.com/search-github/github-code-search/understanding-github-code-search-syntax
Sign in https://patch-diff.githubusercontent.com/login?return_to=https%3A%2F%2Fgithub.com%2FWormLabCaltech%2Falaska
Sign up https://patch-diff.githubusercontent.com/signup?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E&source=header-repo&source_repo=WormLabCaltech%2Falaska
Reloadhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Reloadhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Reloadhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
WormLabCaltech https://patch-diff.githubusercontent.com/WormLabCaltech
alaskahttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FWormLabCaltech%2Falaska
Fork 0 https://patch-diff.githubusercontent.com/login?return_to=%2FWormLabCaltech%2Falaska
Star 6 https://patch-diff.githubusercontent.com/login?return_to=%2FWormLabCaltech%2Falaska
alaska.caltech.eduhttp://alaska.caltech.edu
MIT license https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/LICENSE
6 stars https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/stargazers
0 forks https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/forks
Branches https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/branches
Tags https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tags
Activity https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/activity
Star https://patch-diff.githubusercontent.com/login?return_to=%2FWormLabCaltech%2Falaska
Notifications https://patch-diff.githubusercontent.com/login?return_to=%2FWormLabCaltech%2Falaska
Code https://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Issues 8 https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/issues
Pull requests 0 https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/pulls
Actions https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/actions
Projects 0 https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/projects
Security 0 https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/security
Insights https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/pulse
Code https://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Issues https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/issues
Pull requests https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/pulls
Actions https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/actions
Projects https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/projects
Security https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/security
Insights https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/pulse
Brancheshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/branches
Tagshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tags
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/branches
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tags
987 Commitshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/commits/master/
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/commits/master/
jsonshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tree/master/jsons
jsonshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tree/master/jsons
post_quant_analysishttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tree/master/post_quant_analysis
post_quant_analysishttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tree/master/post_quant_analysis
srchttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tree/master/src
srchttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tree/master/src
.gitignorehttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/.gitignore
.gitignorehttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/.gitignore
LICENSEhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/LICENSE
LICENSEhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/LICENSE
README.mdhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/README.md
README.mdhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/README.md
Readme-template.mdhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/Readme-template.md
Readme-template.mdhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/Readme-template.md
READMEhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
MIT licensehttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#alaska-automated-and-friendly-rna-seq-analysis
http://alaska.caltech.eduhttp://alaska.caltech.edu
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#getting-started
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#prerequisites--dependencies
Python 3.6.xhttps://www.python.org/
ZeroMQhttp://zeromq.org/
Dockerhttps://www.docker.com/
pyunpackhttps://pypi.org/project/pyunpack/
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#the-following-python-libraries-are-also-needed
ZeroMQ Python Bindinghttp://zeromq.org/bindings:python
Pandashttps://pandas.pydata.org/
Docker SDK for Pythonhttps://docker-py.readthedocs.io/en/stable/
Anaconda 3.6.xhttps://www.anaconda.com/
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#installing-alaska
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#starting-the-server
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#adding-model-organisms
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#loading-previous-server-state
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#the-pipeline
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#creating-a-new-project
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#uploading-raw-reads
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#setting-metadata--finalizing-project
JSON-README.mdhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/jsons/JSON-README.md
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#starting-analysis
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#visualizing-the-results
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#testing-considerations
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#planned-features
Enrichment Analysishttps://github.com/dangeles/TissueEnrichmentAnalysis
GEOhttps://www.ncbi.nlm.nih.gov/geo/
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#software-details
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#quality-control
Minicondahttps://conda.io/miniconda.html
Samtoolshttp://samtools.sourceforge.net/
RSeQChttp://rseqc.sourceforge.net/
FastQChttps://www.bioinformatics.babraham.ac.uk/projects/fastqc/
MultiQChttp://multiqc.info/
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#read-alignment--quantification
Bowtie2http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Kallistohttps://pachterlab.github.io/kallisto/
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#differential-expression-analysis
Sleuthhttp://pachterlab.github.io/sleuth/
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#authors--contributors
https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#license
LICENSEhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/blob/master/LICENSE
alaska.caltech.eduhttp://alaska.caltech.edu
python https://patch-diff.githubusercontent.com/topics/python
docker https://patch-diff.githubusercontent.com/topics/docker
automation https://patch-diff.githubusercontent.com/topics/automation
quality-control https://patch-diff.githubusercontent.com/topics/quality-control
rna-seq https://patch-diff.githubusercontent.com/topics/rna-seq
pipeline https://patch-diff.githubusercontent.com/topics/pipeline
analysis https://patch-diff.githubusercontent.com/topics/analysis
portal https://patch-diff.githubusercontent.com/topics/portal
kallisto https://patch-diff.githubusercontent.com/topics/kallisto
alaska https://patch-diff.githubusercontent.com/topics/alaska
analysis-pipeline https://patch-diff.githubusercontent.com/topics/analysis-pipeline
sleuth https://patch-diff.githubusercontent.com/topics/sleuth
Readme https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#readme-ov-file
MIT license https://patch-diff.githubusercontent.com/WormLabCaltech/alaska#MIT-1-ov-file
Please reload this pagehttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Activityhttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/activity
Custom propertieshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/custom-properties
6 starshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/stargazers
3 watchinghttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/watchers
0 forkshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/forks
Report repository https://patch-diff.githubusercontent.com/contact/report-content?content_url=https%3A%2F%2Fgithub.com%2FWormLabCaltech%2Falaska&report=WormLabCaltech+%28user%29
Releaseshttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska/releases
2 tags https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/tags
Packages 0https://patch-diff.githubusercontent.com/orgs/WormLabCaltech/packages?repo_name=alaska
Please reload this pagehttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Contributors 2https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/graphs/contributors
Please reload this pagehttps://patch-diff.githubusercontent.com/WormLabCaltech/alaska
Python 34.7% https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/search?l=python
HTML 21.2% https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/search?l=html
JavaScript 21.0% https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/search?l=javascript
CSS 13.4% https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/search?l=css
Perl 4.5% https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/search?l=perl
Shell 2.2% https://patch-diff.githubusercontent.com/WormLabCaltech/alaska/search?l=shell
https://github.com
Termshttps://docs.github.com/site-policy/github-terms/github-terms-of-service
Privacyhttps://docs.github.com/site-policy/privacy-policies/github-privacy-statement
Securityhttps://github.com/security
Statushttps://www.githubstatus.com/
Communityhttps://github.community/
Docshttps://docs.github.com/
Contacthttps://support.github.com?tags=dotcom-footer

Viewport: width=device-width


URLs of crawlers that visited me.